Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0005
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 200 1e-51
03_02_0544 - 9362615-9362674,9362783-9362857,9362934-9363144,936... 199 1e-51
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833... 198 3e-51
07_01_1091 - 10015180-10015236,10015705-10015779,10015874-100161... 175 2e-44
10_08_0015 + 14116129-14116691,14116810-14117128,14117588-141186... 29 2.4
03_06_0352 - 33312443-33312652,33312747-33312854,33313224-333133... 29 2.4
10_05_0057 - 8660321-8660422,8661022-8661050,8662286-8662676 29 3.1
02_02_0309 + 8833709-8834044,8834135-8834289,8834427-8834511,883... 29 4.1
01_07_0280 + 42452993-42453337,42453778-42453981 29 4.1
10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376 28 5.5
04_03_0612 + 18023354-18023916,18024046-18024805 28 7.2
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 200 bits (487), Expect = 1e-51
Identities = 94/166 (56%), Positives = 119/166 (71%)
Frame = +3
Query: 3 GVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIRCICLLDHPISNTKDALSTQIIIPQKQV 182
GV S ETAKCK+V CDPSY+P++VRK G+V R I ++ HPI+NT D+ S QII+PQKQ+
Sbjct: 268 GVTSEGETAKCKKVVCDPSYLPNKVRKIGKVARAIAIMSHPIANTNDSHSVQIILPQKQL 327
Query: 183 ERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDY 362
R SD+YV SYTH VA KG FIA VST ET+ PESE++PG+ LLG + + F + D
Sbjct: 328 GRKSDMYVFGCSYTHNVAPKGKFIAFVSTEAETDHPESELKPGIDLLGQVDELFFDIYDR 387
Query: 363 YEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFS 500
YEP+++ S F+S SYDATTHFETT DVL +Y TG+ D S
Sbjct: 388 YEPVNEPSLDNCFVSTSYDATTHFETTVTDVLNMYTLITGKTVDLS 433
>03_02_0544 -
9362615-9362674,9362783-9362857,9362934-9363144,
9363279-9363403,9363492-9363593,9363676-9363738,
9363817-9363897,9364248-9364359,9364454-9364626,
9364722-9364829,9364909-9364992,9365131-9365193,
9365652-9365738
Length = 447
Score = 199 bits (486), Expect = 1e-51
Identities = 90/166 (54%), Positives = 117/166 (70%)
Frame = +3
Query: 3 GVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIRCICLLDHPISNTKDALSTQIIIPQKQV 182
GV S ETAKCK+V CDPSY+PD+V+K G+V R IC++ HPI +TKD+ S QII+P+KQ+
Sbjct: 268 GVTSEGETAKCKKVVCDPSYLPDKVKKVGRVARAICIMKHPIPDTKDSHSVQIILPKKQL 327
Query: 183 ERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDY 362
+R SD+YV SY H VA KG FIA VST E + PE E++PG+ LLG + + F + D
Sbjct: 328 KRKSDMYVFCCSYAHNVAPKGKFIAFVSTEAEADKPEIELKPGIDLLGPVEETFFDIYDR 387
Query: 363 YEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFS 500
YEP + + F++ SYDATTHFETT DVL +Y TG+E D S
Sbjct: 388 YEPTNTADEDNCFVTNSYDATTHFETTVKDVLALYSKITGKELDLS 433
>05_03_0407 +
13582595-13582681,13583067-13583129,13583289-13583372,
13583757-13583864,13584018-13584190,13585190-13585301,
13585424-13585504,13585611-13585673,13585764-13585865,
13586063-13586187,13586316-13586526,13586614-13586688,
13586950-13587003
Length = 445
Score = 198 bits (483), Expect = 3e-51
Identities = 92/166 (55%), Positives = 120/166 (72%)
Frame = +3
Query: 3 GVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIRCICLLDHPISNTKDALSTQIIIPQKQV 182
GV S ETAKCK+V CDPSY+P++VRK G+V R I ++ HPI++T D+ S QII+PQKQ+
Sbjct: 268 GVTSEGETAKCKKVVCDPSYLPNKVRKIGKVARAIAIMSHPIASTNDSHSVQIILPQKQL 327
Query: 183 ERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDY 362
R SD+YV SYTH VA KG FIA VST ET++P+SE++PG+ LLG + + F + D
Sbjct: 328 GRKSDMYVFCCSYTHNVAPKGKFIAFVSTEAETDNPQSELKPGIDLLGQVDELFFDIYDR 387
Query: 363 YEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFS 500
YEP+++ S F+S SYDATTHFETT DVL +Y TG+ D S
Sbjct: 388 YEPVNEPSLDNCFVSTSYDATTHFETTVTDVLNMYTLITGKAVDLS 433
>07_01_1091 -
10015180-10015236,10015705-10015779,10015874-10016149,
10016204-10016332,10017070-10017171,10017626-10017688,
10017776-10017856,10018218-10018314,10019064-10019236,
10019327-10019434,10019706-10019789,10019985-10020047,
10020483-10020569
Length = 464
Score = 175 bits (427), Expect = 2e-44
Identities = 92/189 (48%), Positives = 117/189 (61%), Gaps = 23/189 (12%)
Frame = +3
Query: 3 GVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIRCICLLDHPISNTKDALSTQIIIPQKQV 182
GV S ETAKCK+V CDPSY+PD+VRK G+V R I ++ HPI NT D+ S QIIIPQKQ+
Sbjct: 263 GVTSEGETAKCKKVVCDPSYIPDKVRKVGKVFRAIAIMSHPIPNTADSHSVQIIIPQKQL 322
Query: 183 ERNSDI-----------------------YVSVVSYTHQVAAKGWFIAMVSTTVETNDPE 293
R SD+ YV SY+H VA+KG FIA VS E+ +P
Sbjct: 323 GRKSDMQITLGLLVISIIVTKECSLVHARYVFCCSYSHNVASKGKFIAFVSAQAESENPA 382
Query: 294 SEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKH 473
+E++PG+ LLG + + F+ D +EP +D S FIS SYDATTHFE+T +DVL IY
Sbjct: 383 AELKPGIDLLGPVDELFIDTYDRFEPTNDPSSDNCFISTSYDATTHFESTVMDVLSIYTK 442
Query: 474 GTGEEFDFS 500
TG+ D S
Sbjct: 443 ITGKTVDLS 451
>10_08_0015 +
14116129-14116691,14116810-14117128,14117588-14118664,
14118754-14119056
Length = 753
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = +3
Query: 369 PIDDGSQSQIFISESYDATTHFETTCLDVL------KIYKHGTGEEFDFSKVKLELGEED 530
P D + +E D T ETT DVL ++ HG G+ D S V ++L D
Sbjct: 36 PSGDQTLDSDVANEPNDGETEIETTVDDVLSESTHEQVENHGDGDNVDDSSVHIDLDSSD 95
>03_06_0352 -
33312443-33312652,33312747-33312854,33313224-33313397,
33313489-33313695,33313700-33313987,33314087-33314319,
33314450-33315263
Length = 677
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 174 KQVERNSDIYVSVVSYTHQVAAKG-WFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVS 350
K+VER +Y+ ++Y H+ G W ++ E P + PG + I Q VS
Sbjct: 542 KKVEREGSMYIGNINYYHRPLRSGKWSVSYEEWQEEVYPPYAN-GPGYVISSDIAQYIVS 600
Query: 351 VTD 359
D
Sbjct: 601 EFD 603
>10_05_0057 - 8660321-8660422,8661022-8661050,8662286-8662676
Length = 173
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 474 GTGEEFDFSKVKLELGEEDQ*ITERSHEKIICILLVIQ 587
G+GEE + K KLE+GE+ + S + ++ +L +Q
Sbjct: 65 GSGEEVERIKSKLEIGEDGSPTSNSSEKTVVELLRALQ 102
>02_02_0309 +
8833709-8834044,8834135-8834289,8834427-8834511,
8835009-8835057,8835098-8835272,8835523-8835593,
8835723-8836351
Length = 499
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = -3
Query: 305 SDFRFRIIGLNSSRDHSNKPTLSCNLVSVGHNRHIDIRIPLNLFLRDYNLSGKCILGVRN 126
S F IG +S SN C++ + G+ HI I F+R+ + + VRN
Sbjct: 339 SPFSGIAIGSEASGGVSNVLVEDCSIFNSGYGIHIKTNIGRGGFIRNITVDNVRMNSVRN 398
Query: 125 GM 120
G+
Sbjct: 399 GL 400
>01_07_0280 + 42452993-42453337,42453778-42453981
Length = 182
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 126 WDDLIDKCIVSPDPSYGHGQGHSLGH 49
+ +D+C + +GHG GH GH
Sbjct: 5 YSSTVDECYETTGRQHGHGHGHGHGH 30
>10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376
Length = 418
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = -3
Query: 212 NRHIDIRIPLNLFLRDYNL 156
N H+D+R+ LNL+L+ Y++
Sbjct: 389 NHHLDLRLSLNLYLQAYDM 407
>04_03_0612 + 18023354-18023916,18024046-18024805
Length = 440
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 436 KQLVWMCLKFINMVLGKNLISLKSSWNLVKRIS 534
K L +CL+++N V+ K++I L S +K IS
Sbjct: 223 KALERLCLEYVNGVIDKDMIVLSQSCKNLKSIS 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,589,548
Number of Sequences: 37544
Number of extensions: 335713
Number of successful extensions: 803
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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