Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0005
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical p... 241 3e-64
U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein. 241 3e-64
Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical p... 226 1e-59
U39650-5|AAK39185.2| 632|Caenorhabditis elegans Hypothetical pr... 31 0.93
AL032655-5|CAA21723.1| 360|Caenorhabditis elegans Hypothetical ... 29 2.1
AF016676-6|AAG24108.1| 354|Caenorhabditis elegans Seven tm rece... 29 2.1
Z70286-4|CAA94291.2| 533|Caenorhabditis elegans Hypothetical pr... 29 3.7
AJ582070-1|CAE46540.1| 533|Caenorhabditis elegans flavin monoox... 29 3.7
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 29 3.7
Z81556-7|CAB04519.1| 569|Caenorhabditis elegans Hypothetical pr... 28 6.5
>Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical
protein Y57G11C.10a protein.
Length = 444
Score = 241 bits (590), Expect = 3e-64
Identities = 110/177 (62%), Positives = 140/177 (79%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 GVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIRCICLLDHPISNTKDALSTQIIIPQKQV 182
GV+ G+E + KQ+YCDPSY DRV+K GQV+R ICLL+HPI NT DA S QIIIPQKQV
Sbjct: 268 GVKCGDEIVRGKQIYCDPSYAKDRVKKTGQVVRAICLLNHPIPNTNDAQSCQIIIPQKQV 327
Query: 183 ERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDY 362
R+ DIY+S S T+ V KGW++AMVSTTVET +PE+E+ PGL LLGAI +KF+ ++D
Sbjct: 328 GRHYDIYISCCSNTNMVTPKGWYLAMVSTTVETANPEAEVLPGLQLLGAIAEKFIQISDV 387
Query: 363 YEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFSKV-KLELGEED 530
YEP D GS+SQIFIS+SYDATTHFETTC DVL +++ GT +EFDF+ + L L +++
Sbjct: 388 YEPSDLGSESQIFISQSYDATTHFETTCKDVLNMFERGTTKEFDFTNITHLSLNDQE 444
>U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein.
Length = 444
Score = 241 bits (590), Expect = 3e-64
Identities = 110/177 (62%), Positives = 140/177 (79%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 GVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIRCICLLDHPISNTKDALSTQIIIPQKQV 182
GV+ G+E + KQ+YCDPSY DRV+K GQV+R ICLL+HPI NT DA S QIIIPQKQV
Sbjct: 268 GVKCGDEIVRGKQIYCDPSYAKDRVKKTGQVVRAICLLNHPIPNTNDAQSCQIIIPQKQV 327
Query: 183 ERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDY 362
R+ DIY+S S T+ V KGW++AMVSTTVET +PE+E+ PGL LLGAI +KF+ ++D
Sbjct: 328 GRHYDIYISCCSNTNMVTPKGWYLAMVSTTVETANPEAEVLPGLQLLGAIAEKFIQISDV 387
Query: 363 YEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFSKV-KLELGEED 530
YEP D GS+SQIFIS+SYDATTHFETTC DVL +++ GT +EFDF+ + L L +++
Sbjct: 388 YEPSDLGSESQIFISQSYDATTHFETTCKDVLNMFERGTTKEFDFTNITHLSLNDQE 444
>Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical
protein Y57G11C.10b protein.
Length = 459
Score = 226 bits (552), Expect = 1e-59
Identities = 110/192 (57%), Positives = 140/192 (72%), Gaps = 16/192 (8%)
Frame = +3
Query: 3 GVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIRCICLLDHPISNTKDALSTQIIIPQKQV 182
GV+ G+E + KQ+YCDPSY DRV+K GQV+R ICLL+HPI NT DA S QIIIPQKQV
Sbjct: 268 GVKCGDEIVRGKQIYCDPSYAKDRVKKTGQVVRAICLLNHPIPNTNDAQSCQIIIPQKQV 327
Query: 183 ERN---------------SDIYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLA 317
R+ DIY+S S T+ V KGW++AMVSTTVET +PE+E+ PGL
Sbjct: 328 GRHYGKFIVLEKQRVAQKRDIYISCCSNTNMVTPKGWYLAMVSTTVETANPEAEVLPGLQ 387
Query: 318 LLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDF 497
LLGAI +KF+ ++D YEP D GS+SQIFIS+SYDATTHFETTC DVL +++ GT +EFDF
Sbjct: 388 LLGAIAEKFIQISDVYEPSDLGSESQIFISQSYDATTHFETTCKDVLNMFERGTTKEFDF 447
Query: 498 SKV-KLELGEED 530
+ + L L +++
Sbjct: 448 TNITHLSLNDQE 459
>U39650-5|AAK39185.2| 632|Caenorhabditis elegans Hypothetical
protein C25A11.2 protein.
Length = 632
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = -3
Query: 596 NKQLNNKQYTYYFFMRPLSYLLILFTKFQLDFREIKFFPSTMF---INFKHIQT 444
N + + Q+T+Y P YLLI FQ++ R++ T+F ++ ++IQT
Sbjct: 341 NVKSHTSQFTFYLENSPNGYLLIAGGCFQMESRQLVNLKLTLFDSGVSCRNIQT 394
>AL032655-5|CAA21723.1| 360|Caenorhabditis elegans Hypothetical
protein Y6B3B.10 protein.
Length = 360
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -3
Query: 605 FSLNKQLNNKQYTYYFFMRPLSYLL--ILFTKFQLDFREIKFFPSTMF 468
F L K+ N + Y YYF M +++L I++ F+L + K +T++
Sbjct: 231 FYLKKRTNRQYYKYYFLMGNAAFILFAIIWVIFRLYWYTCKLLYATIY 278
>AF016676-6|AAG24108.1| 354|Caenorhabditis elegans Seven tm
receptor protein 253 protein.
Length = 354
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = -3
Query: 560 FFMRPLSYLLILFTKFQLDFREIKFFPSTMFINFKHIQTSCFKVCGGIIRFRNKYLALAT 381
FF + ++LLI TK + R I F +FI F + + I F +YLAL++
Sbjct: 72 FFTKDSAFLLITNTKNSIFPRRISMFVEELFIGFYGLAMAIL-----AIHFIYRYLALSS 126
Query: 380 IIDWL 366
I WL
Sbjct: 127 NI-WL 130
>Z70286-4|CAA94291.2| 533|Caenorhabditis elegans Hypothetical
protein K08C7.2 protein.
Length = 533
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -3
Query: 335 PNGTQKSQTRSDFRFRIIGLNSSRDHSNKPTLSCNLVSVGHNRHIDIRIPLN 180
PN QK + + DF+ RII +S +DH +V +G N D+ + L+
Sbjct: 156 PNWPQKFRGQDDFKGRIIHSHSYKDHRGYEDKVVVVVGIG-NSGGDVAVELS 206
>AJ582070-1|CAE46540.1| 533|Caenorhabditis elegans flavin
monooxygenase protein.
Length = 533
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -3
Query: 335 PNGTQKSQTRSDFRFRIIGLNSSRDHSNKPTLSCNLVSVGHNRHIDIRIPLN 180
PN QK + + DF+ RII +S +DH +V +G N D+ + L+
Sbjct: 156 PNWPQKFRGQDDFKGRIIHSHSYKDHRGYEDKVVVVVGIG-NSGGDVAVELS 206
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 378 DGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFSKVKLELGEEDQ*ITERS 551
D + QIF+ + D + + V+K+Y GTGE+ D +K +L ED RS
Sbjct: 65 DREKDQIFLQTAEDLKEAIKFSRF-VVKLYAEGTGEK-DLKGLKKDLKSEDDEDDRRS 120
>Z81556-7|CAB04519.1| 569|Caenorhabditis elegans Hypothetical
protein F58G1.7 protein.
Length = 569
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = -3
Query: 608 GFSLNKQLNNKQYTYYFF-----MRPLSYLLILFTKFQLDFREIKFFPSTMFINF 459
GF++N L N + Y + M L L + FQL F +T+F+NF
Sbjct: 235 GFTVNFYLLNSSFQYQIYSPMPTMHKLRLTLTFYGVFQLFISIFIFLSATIFLNF 289
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,607,434
Number of Sequences: 27780
Number of extensions: 307367
Number of successful extensions: 805
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -