Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0005
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1) i...   197   6e-51
At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2) i...   195   2e-50
At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putativ...   181   4e-46
At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-g...    29   2.0  
At3g12080.1 68416.m01504 GTP-binding family protein contains Pfa...    29   2.0  
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ...    29   3.5  
At4g19860.1 68417.m02910 lecithin:cholesterol acyltransferase fa...    28   6.1  
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG...    27   8.0  

>At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1)
           identical to GDP dissociation inhibitor [Arabidopsis
           thaliana] GI:1655424
          Length = 445

 Score =  197 bits (480), Expect = 6e-51
 Identities = 90/166 (54%), Positives = 121/166 (72%)
 Frame = +3

Query: 3   GVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIRCICLLDHPISNTKDALSTQIIIPQKQV 182
           GV S  ETAKCK+V CDPSY+ ++VRK G+V R I ++ HPI NT D+ S Q+I+PQKQ+
Sbjct: 268 GVTSEGETAKCKKVVCDPSYLTNKVRKIGRVARAIAIMSHPIPNTNDSQSVQVILPQKQL 327

Query: 183 ERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDY 362
            R SD+YV   SY+H VA KG FIA VST  ET++P++E++PG+ LLG + + F  + D 
Sbjct: 328 GRKSDMYVFCCSYSHNVAPKGKFIAFVSTDAETDNPQTELQPGIDLLGPVDELFFDIYDR 387

Query: 363 YEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFS 500
           YEP+++ +    FIS SYDATTHF+TT +DVL +YK  TG+E D S
Sbjct: 388 YEPVNEPTLDNCFISTSYDATTHFDTTVVDVLNMYKLITGKELDLS 433


>At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2)
           identical to Rab GDP dissociation inhibitor AtGDI2
           [Arabidopsis thaliana] GI:2446981
          Length = 444

 Score =  195 bits (475), Expect = 2e-50
 Identities = 90/166 (54%), Positives = 118/166 (71%)
 Frame = +3

Query: 3   GVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIRCICLLDHPISNTKDALSTQIIIPQKQV 182
           GV S  ETAKCK++ CDPSY+P++VRK G+V R I ++ HPI NT D+ S Q+IIPQKQ+
Sbjct: 268 GVTSEGETAKCKKIVCDPSYLPNKVRKIGRVARAIAIMSHPIPNTNDSHSVQVIIPQKQL 327

Query: 183 ERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDY 362
            R SD+YV   SY+H VA KG FIA VST  ET++P++E++PG  LLG + + F  + D 
Sbjct: 328 ARKSDMYVFCCSYSHNVAPKGKFIAFVSTDAETDNPQTELKPGTDLLGPVDEIFFDMYDR 387

Query: 363 YEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFS 500
           YEP+++      FIS SYDATTHFETT  DVL +Y   TG++ D S
Sbjct: 388 YEPVNEPELDNCFISTSYDATTHFETTVADVLNMYTLITGKQLDLS 433


>At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putative
           strong similarity to GDP dissociation inhibitor protein
           OsGDI1 [Oryza sativa] GI:2384758; contains Pfam profile
           PF00996: GDP dissociation inhibitor
          Length = 365

 Score =  181 bits (440), Expect = 4e-46
 Identities = 84/166 (50%), Positives = 112/166 (67%)
 Frame = +3

Query: 3   GVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIRCICLLDHPISNTKDALSTQIIIPQKQV 182
           GV S  ETAKCK+V CDPSY+ ++V+K G+V R +C++ HPI +T DA S QII+PQKQ+
Sbjct: 188 GVTSAGETAKCKKVVCDPSYLSEKVKKVGKVTRAVCIMSHPIPDTNDAHSVQIILPQKQL 247

Query: 183 ERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDY 362
            R SD+Y+   SY H VA KG +IA VS   ET++PE E++PG+ LLG   + F    D 
Sbjct: 248 GRKSDMYLFCCSYAHNVAPKGKYIAFVSAEAETDNPEEELKPGIELLGPTDEIFYHSYDT 307

Query: 363 YEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFS 500
           Y P +   +   FIS +YDATTHFE+T +DVL +Y   TG+  D S
Sbjct: 308 YVPTNIQEEDNCFISATYDATTHFESTVVDVLDMYTKITGKTLDLS 353


>At4g04970.1 68417.m00722 callose synthase, putative /
           1,3-beta-glucan synthase, putative similar to callose
           synthase 1 catalytic subunit GI:13649388 from
           [Arabidopsis thaliana]
          Length = 1768

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 10/58 (17%)
 Frame = +3

Query: 432 FETTCLDVLKIYKHGTGEEFDFSKVKLELGE--EDQ*ITE--------RSHEKIICIL 575
           F++    +LKI K+GT EE   +++ +E+ E  E++ ITE        R HEK+I +L
Sbjct: 724 FDSIKFVILKIVKNGTEEESILNRLFMEIDENVENEKITEVYKLTVLLRIHEKLISLL 781


>At3g12080.1 68416.m01504 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 663

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 24/87 (27%), Positives = 36/87 (41%)
 Frame = +3

Query: 204 VSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDG 383
           +SV+SYTHQ      F  +V+ T++ +  E E+             F    DY +  DD 
Sbjct: 46  LSVLSYTHQHPHSSRFPFLVAATLDGSSAEEEL-DFEEFDQYAEDNFAD--DYSDDEDDS 102

Query: 384 SQSQIFISESYDATTHFETTCLDVLKI 464
               +   E+ D    + TT    LKI
Sbjct: 103 IDISVLEKEARDIVRDYATTLSRELKI 129


>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
           protein Mei2-like protein, Arabidopsis thaliana,
           gb:D86122
          Length = 785

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 385 AKAKYLFRNLMMPPHTLKQLVWM-CLKFINMVLGKNLISLKSSWNLVKRIS 534
           +++KY   NL+   H LK ++++ C+  +N +    L   +SS     R S
Sbjct: 698 SESKYPVNNLLQQTHDLKMIIYLFCVYLMNWLTHTCLFETRSSGEFAARAS 748


>At4g19860.1 68417.m02910 lecithin:cholesterol acyltransferase
           family protein / LACT family protein similar to
           lysosomal phospholipase A2 [Mus musculus] GI:18699602;
           contains Pfam profile PF02450: Lecithin:cholesterol
           acyltransferase (phosphatidylcholine-sterol
           acyltransferase)
          Length = 535

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -2

Query: 495 NQILPQYHVYKF*AHPDKLFQSVWWHHKIPK*IFGFGYHHRLAHNSQSLIQTFA 334
           + I+ +  VY F  H + + + + W  +  K +FGFGY  R ++  Q  +  FA
Sbjct: 111 DMIVGRESVYYF--H-EMIVEMIGWGFEEGKTLFGFGYDFRQSNRLQETLDQFA 161


>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
           identical to P-glycoprotein GI:3849833 from [Arabidopsis
           thaliana]; homologous to mammalian mdr gene,contains
           ATP-binding cassette; related to multi drug resistance
           proteins
          Length = 1286

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 343 NFCLMAPKRAKPGLISDSGSLVSTVVETI 257
           NFCL  P      L+  SGS  STVV  I
Sbjct: 388 NFCLSVPAGKTIALVGSSGSGKSTVVSLI 416


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,745,298
Number of Sequences: 28952
Number of extensions: 286539
Number of successful extensions: 717
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)