Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0004
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)                 30   1.4  
SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 362

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 6   SPGLQANSTSEGAEMPKAVTTEPWDGKDG 92
           S G  + +T  G  +P+  + E WDGKDG
Sbjct: 308 SVGRGSTATMRGDSLPELSSIEAWDGKDG 336


>SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 691

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 416 NMTKFNLCKLESFIE*NLDCENPSGFIYRISKTDLS 523
           ++ + NLC  E F+  +L+C    G    + K D+S
Sbjct: 394 SIEELNLCGCECFVSSDLECYFEEGLFSNLEKLDIS 429


>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 1  VDPPGCRQTAPVKEQRCPKP 60
          VDPPGCR + P + +   +P
Sbjct: 36 VDPPGCRNSMPDRPRHAARP 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,596,772
Number of Sequences: 59808
Number of extensions: 241745
Number of successful extensions: 515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)