Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0003
(618 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su... 44 1e-04
At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 ... 29 1.9
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR... 28 5.7
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 28 5.7
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th... 28 5.7
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom... 27 7.5
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi... 27 7.5
At5g11040.1 68418.m01290 expressed protein weak similarity to hy... 27 10.0
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR... 27 10.0
At3g48380.2 68416.m05281 expressed protein 27 10.0
At3g48380.1 68416.m05280 expressed protein 27 10.0
At3g18215.1 68416.m02317 expressed protein contains Pfam profile... 27 10.0
>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
subunit family protein similar to ATPase subunit 9
[Arabidopsis thaliana] GI:15215920; contains Pfam
profile PF00137: ATP synthase subunit C
Length = 85
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = +3
Query: 315 FGSLIIGYARNPSLKQQLFSYAILGFALSE 404
F SLI ARNPSL +Q F YAILGFAL+E
Sbjct: 39 FSSLIHSVARNPSLAKQSFGYAILGFALTE 68
>At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 /
alpha-SNAP1 (ASNAP1) identical to alpha-soluble NSF
attachment protein 1 (Alpha-SNAP1) (N-
ethylmaleimide-sensitive factor attachment protein,
alpha 1) (Swiss-Prot:Q9LXZ5) [Arabidopsis thaliana]
Length = 381
Score = 29.5 bits (63), Expect = 1.9
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = -2
Query: 596 CNTHQSLHHYEG-EVSKHSIPWLSTP-DSIH*NLICRMAVVVFLKVNSLESE-EQQERHH 426
C H+ +YE E+ + +I + T + + A LKV S+ EQQ R
Sbjct: 167 CMDHEIAEYYESDEMFEQAIAYYETAAEFFQIEEVTTSANQCNLKVAQYASQLEQQSRFM 226
Query: 425 KTEQTHSLRQGETQNGV*EQLLLEG 351
KT+ HSL + GV LL G
Sbjct: 227 KTQARHSLNNKLLKYGVKGHLLTAG 251
>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1095
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 49 LIKTKCCLPPD*SPLQPGLPSSATLH--WCDHLQQYPPI 159
L++ CC + P LPS LH +C LQ +P I
Sbjct: 682 LLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEI 720
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -3
Query: 253 NLAAESMSLVTDVVWKDRTAESCVGTAGTICVWVGTAASGRTS 125
N+A+E + L+ ++ CV +C+ VG ++SG+TS
Sbjct: 2028 NIASEQLKLLPEIRQNLEAVAHCVQNKW-LCILVGPSSSGKTS 2069
>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|O04630
Threonyl-tRNA synthetase, mitochondrial precursor (EC
6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
thaliana}; contains Pfam profiles PF00587: tRNA
synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain, PF02824: TGS domain
Length = 458
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 208 SRPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAM 339
SRPH ++ +TLLP+ + R+WE ++ ++ S + SA+
Sbjct: 37 SRPHDPIK-ITLLPDGIEKEGRRWETSPMDIAVQISKGLAKSAL 79
>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
domain, PF03343: SART-1 family
Length = 820
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 341 GIADDEGAEDCSNTSSGTSYSHCRCTSTNEFG 246
GI DD+G ++ + S + R T+EFG
Sbjct: 660 GIVDDDGGKESKDKESKDRFKDIRIERTDEFG 691
>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 656
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -2
Query: 593 NTHQSLHHYEGEVSKHSIPWLSTPDSIH*NLICRMAVVVFLKVNSLESEE 444
N + H++E KH++ W S + N + AV +F+++N +E E+
Sbjct: 358 NVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMN-IEGEK 406
>At5g11040.1 68418.m01290 expressed protein weak similarity to
hypercellular protein [Aspergillus nidulans] GI:9309269
Length = 1186
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 236 NVLSDRCGLEGPHCRELCRDSRYHLCMGG 150
NVL R G P+ CR +H+C+ G
Sbjct: 1155 NVLRARAGTASPNEPIFCRGPPFHVCVAG 1183
>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1234
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 332 DDEGAEDCSNTSSGTSYS-HCRCTSTNEFGSRVNVLSD 222
DDE ++D + SS T YS C + ++ G+ ++ D
Sbjct: 1108 DDESSDDDDDLSSETDYSDECEDSDDSDLGNEIDYSED 1145
>At3g48380.2 68416.m05281 expressed protein
Length = 640
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 284 SWFRSWYWNSLRLPHHRLCQEPL 352
SWFR ++ S+ +P HR Q+ L
Sbjct: 477 SWFRLQHYTSISVPSHREIQQTL 499
>At3g48380.1 68416.m05280 expressed protein
Length = 645
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 284 SWFRSWYWNSLRLPHHRLCQEPL 352
SWFR ++ S+ +P HR Q+ L
Sbjct: 482 SWFRLQHYTSISVPSHREIQQTL 504
>At3g18215.1 68416.m02317 expressed protein contains Pfam profile
PF04654: Protein of unknown function, DUF599
Length = 244
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 382 FWVSPCLRLWVCSVL*WRSCCSSLSKLFTFKNTTTAIL-HMRFQCILSGVDS 534
F+ S L LW + CC +S + F +TTT+ H+ Q DS
Sbjct: 181 FYFSFPLFLWTFGPIPMFVCCCMMSSILYFLDTTTSFTRHLHSQSFRETADS 232
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,034,104
Number of Sequences: 28952
Number of extensions: 299826
Number of successful extensions: 929
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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