Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0002
(594 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 2e-14
SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 7e-12
SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 6e-07
SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 30 1.6
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 27 8.6
SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 76.2 bits (179), Expect = 2e-14
Identities = 29/54 (53%), Positives = 43/54 (79%)
Frame = +2
Query: 431 GGLGLGVFEACILSEELAYGCSGIMAAVYITEVGQTPIIIAGNKEQQKKYLGRL 592
GG+GLGV + C+++EEL+Y CSGI A+ + + P+I+AGN+EQ+KKYLGR+
Sbjct: 175 GGIGLGVLDGCVVTEELSYACSGIQTAIEANSLAEMPVILAGNEEQKKKYLGRM 228
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/38 (52%), Positives = 31/38 (81%)
Frame = +2
Query: 248 TGFCFELTDEQKALQELARKFTKDEIIPVAGQYDKTGE 361
+G F ++DE +ALQ++ARKF ++EI+P A ++DKTGE
Sbjct: 32 SGISFAMSDELRALQDMARKFAREEIMPKAAEHDKTGE 69
>SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 67.7 bits (158), Expect = 7e-12
Identities = 31/90 (34%), Positives = 49/90 (54%)
Frame = +2
Query: 263 ELTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVGLMNGHIPEHCGGLG 442
+L + + L++ R F +E+ PVAG++DK YP VK E+GL+ +PE GG G
Sbjct: 40 KLPETHEMLRKTCRDFADNELTPVAGKFDKEHRYPQEKVKMLGELGLLGVEVPESLGGTG 99
Query: 443 LGVFEACILSEELAYGCSGIMAAVYITEVG 532
L F I EE++ GC+ + + + G
Sbjct: 100 LDAFAYAIAMEEISRGCASLGCIMSVNNYG 129
>SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 58.4 bits (135), Expect = 4e-09
Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Frame = +2
Query: 266 LTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPW--PVVKKAWEVGLMNGHIPEHCGGL 439
LT EQ L+E+A F ++E+ P A Q DK +P KK ++G +P GG+
Sbjct: 41 LTSEQIHLREVAYNFCQNELAPYADQIDKENNFPKLREFWKKLGDLGFHGITVPVDDGGI 100
Query: 440 GLGVFEACILSEELAYGCSGIMAAVY--ITEVGQTPIIIAGNKEQQKKYLGRL 592
G G E I+ EE++ SG +A Y + + I GNKEQ++KYL +L
Sbjct: 101 GSGYMEHIIVLEEMS-RVSGSIALSYGAHSNLCINQIARNGNKEQKRKYLPKL 152
>SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 51.2 bits (117), Expect = 6e-07
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Frame = +2
Query: 263 ELTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVGLMNGHIPEHCGGLG 442
+L++E++ +++ +F K++I P+ + D+ + ++K +E GLM I GG
Sbjct: 41 QLSEEEEMMKQSVARFAKEKIQPLVSEMDQNSQMDPGIIKGLFEQGLMGIEIGSEYGGTD 100
Query: 443 LGVFEACILSEELAY--GCSGIMAAVYITEVGQTPIIIAGNKEQQKKYLGRL 592
F A ++ EELA +M V T + I+ G KEQ+++YL +L
Sbjct: 101 STFFAANLVIEELAKVDPSVSVMCDVQNTLINNL-IMTYGTKEQKQEYLPQL 151
>SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Frame = +2
Query: 269 TDEQKALQELARKFTKDEIIPVAGQYDKTGEYP-WPVVKKAWEVGLMNGHIPEHCGGLGL 445
TD+ L+E KF + EI P +++K +P + KK + G + P GG+GL
Sbjct: 259 TDDHVQLRENLNKFIEKEINPFVDEWEKAKMFPAHELFKKFGKAGYFGVNKPVKYGGMGL 318
Query: 446 GVFEACILSEEL-AYGCSGIMAAVYITEVGQTPIIIA-GNKEQQKKYL 583
+ ++EEL + C G+ A+ + TP ++ G++E ++++L
Sbjct: 319 DYSFSVAMAEELGSIKCGGVPMAIGVQADMATPALVRFGSEELKQQFL 366
>SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1046
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 266 LTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVG 400
LT+ L + K E A Y+ TG W VV +AW VG
Sbjct: 591 LTESALNLASICSKVHHGEANLAADYYEMTGLPLWEVVNRAWNVG 635
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
P S Y+ P + SS AS + P P S P PTS ++ T YSP
Sbjct: 428 PASPSYSPTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 487
Query: 351 L-SY*PAT 331
SY P +
Sbjct: 488 SPSYSPTS 495
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
PTS Y+ P + S S S + P P S P PTS ++ T YSP
Sbjct: 458 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 515
Query: 351 L-SY*PAT 331
SY P +
Sbjct: 516 SPSYSPTS 523
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
PTS Y+ P + S S S + P P S P PTS ++ T YSP
Sbjct: 472 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 529
Query: 351 L-SY*PAT 331
SY P +
Sbjct: 530 SPSYSPTS 537
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
PTS Y+ P + S S S + P P S P PTS ++ T YSP
Sbjct: 486 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 543
Query: 351 L-SY*PAT 331
SY P +
Sbjct: 544 SPSYSPTS 551
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
PTS Y+ P + S S S + P P S P PTS ++ T YSP
Sbjct: 500 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 557
Query: 351 L-SY*PAT 331
SY P +
Sbjct: 558 SPSYSPTS 565
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
PTS Y+ P + S S S + P P S P PTS ++ T YSP
Sbjct: 514 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 571
Query: 351 L-SY*PAT 331
SY P +
Sbjct: 572 SPSYSPTS 579
>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2992
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 516 YTAAMIPEHP*ASSSLKIQASNTPKP-RPPQCSGMCPFIRPTSQAF 382
Y + H S+ ++Q S T + PPQC + P I P+ + +
Sbjct: 238 YVTDVFIVHKPTSTKFRVQVSETEQDANPPQCGEVSPIISPSMRIY 283
>SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -1
Query: 522 VMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTS 391
+++T+A P HP +SS ++ + KPR P S + FI TS
Sbjct: 847 IVHTSAN-PRHPSSSSLSRLIVYTSAKPRYPSSSSLSRFIVLTS 889
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 52 NLISP---NCTQRIKFLYY*FV*IVL*FKLGRSIQDEPVGADCS 174
NL++P NC Q + L Y I FKL RSI P GA CS
Sbjct: 249 NLVNPDSINCIQYQRPLPYSSATIA--FKLERSIPARPFGAPCS 290
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSP 355
P S Y+ A P + AS S AS + P P + P PTS ++ T YSP
Sbjct: 733 PASPSYSPAS-PSYTPASPSYT-PASPSYTPASPSYTPTIPSYSPTSPSYSPTSPSYSP 789
>SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 517
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -1
Query: 528 TSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSP 355
T+ +++M+P P +S S Q S+TP PP G TS + + H P
Sbjct: 376 TTTATSSSMLPNTPSSSPSTGTQPSSTPIHEPP-TQGTTLVTMETSTSHLKSSHHSRP 432
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 462 QASNTPKPRPPQCSGMCPF--IRPTSQAFFTTGHGYS 358
QAS P+ +PP + PF P++QA FT+ +S
Sbjct: 761 QASAGPQSQPPSTFNLAPFGVSAPSTQAPFTSAGSFS 797
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,293,820
Number of Sequences: 59808
Number of extensions: 331889
Number of successful extensions: 886
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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