Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0002
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.1  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
 Frame = +2

Query: 296 LARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVGLMNGHIPEHCGGLGLGVFEACILS- 472
           L R+ T+  I P   +          V+++A  + + N     +   + + V  + +LS 
Sbjct: 145 LTRQDTQSVIFPPVYEILPQHHLDSRVIQEAQNIAIQNTQGKNNQQNILIPVNYSALLSH 204

Query: 473 --EELAYGCSGIMAAVYITEVGQTPIIIAGNKEQQKKYL 583
             ++L+Y    I  A Y  +V     I   N++QQ++ L
Sbjct: 205 DEQQLSYFTQDIGLAAYYAQVNLAGYIQEQNQQQQQQPL 243


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 335 AGQYDKTGEYPWPV 376
           +G+YD+T  YP  V
Sbjct: 61  SGEYDRTKNYPLDV 74


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 335 AGQYDKTGEYPWPV 376
           +G+YD T  YP+ V
Sbjct: 60  SGEYDHTKNYPFDV 73


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 335 AGQYDKTGEYPWPV 376
           +G+YD T  YP+ V
Sbjct: 57  SGEYDHTKNYPFDV 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,336
Number of Sequences: 438
Number of extensions: 3405
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)