Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0001
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|c...    27   0.69 
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    27   0.91 
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    26   2.1  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   3.7  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    25   4.9  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   4.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   6.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    24   8.5  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    24   8.5  

>SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.5 bits (58), Expect = 0.69
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 224 RDIQELLLCNFLRALLDP 171
           R I+E ++CNF R+++DP
Sbjct: 93  RSIKEGIICNFTRSIIDP 110


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 194 SYTTAIPGCHVKLRIAPRGLA--AEPPISVPGLLSRTTARYPNATA 325
           +Y T++P  +V     P  +    E   + P L+  TTA+YP A+A
Sbjct: 248 AYATSVPESYVAPMEPPAAVLPDGEERYATPDLVPDTTAQYPYASA 293


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 69  SVLFLCSCTASMSVQCLVSLNYH 1
           +VL LCS  A  SV  ++S NYH
Sbjct: 161 AVLSLCSELARQSVNSVISGNYH 183


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 200 TTAIPGCHVK-LRIAPRGLAAEPPISVPGLLSRTTARYPNATA 325
           TTA+P   +  + ++   LA++P IS+P   S    RYP   A
Sbjct: 140 TTALPNPSLSNVSVSTTNLASKPVISLPQADSIDKFRYPKLHA 182


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 207 AVV*LSAGTT*SGPFKYIC*LTPFATCMLFVLRVSVAPFSTVTVE-FSVLFL 55
           A+V LS  +T +  + Y+C L     C+L V  +  A   T+    FS++ L
Sbjct: 47  AIVLLSPKSTAASEWNYLCNLQDLHECVLCVDTILPANLQTIAKRIFSLVLL 98


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = -1

Query: 247 AGGDAKFDVTSRN--CCCVTFCGH 182
           A G  +F  ++ N  CCC T  GH
Sbjct: 115 AAGQLEFSPSTNNALCCCTTVHGH 138


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +1

Query: 142 SQSTNILKRTGSSSARRKLHNSNSWMSRQTSHRPPRLSSGASYISAWITKSNYRQIS*RY 321
           S ST+    T SSS+  +  +S+S  S  +SH+    SS +   SA ++ + Y   +   
Sbjct: 375 SSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKS---SSSSKSSSAPVSSAFYHNSTSSR 431

Query: 322 STGH 333
           S+ H
Sbjct: 432 SSSH 435


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 302 ARYPNATALATKKADG 349
           A YPNA A  T  ADG
Sbjct: 114 AYYPNAAATTTTNADG 129


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 251 LAAEPPISVPGLLSRTTARYPNATALATK 337
           L +E PIS+PGL S      P+  +L  K
Sbjct: 14  LNSEEPISLPGLCSLCIQGIPDEYSLRAK 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,510,673
Number of Sequences: 5004
Number of extensions: 27659
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)