Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0001
         (367 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07660.1 68416.m00918 expressed protein                             28   1.7  
At5g52710.1 68418.m06543 heavy-metal-associated domain-containin...    28   2.2  
At1g32740.1 68414.m04037 expressed protein                             27   2.9  
At3g01490.1 68416.m00073 protein kinase, putative similar to ATM...    27   5.0  
At3g07890.1 68416.m00964 RabGAP/TBC domain-containing protein si...    26   6.7  
At5g62000.3 68418.m07784 transcriptional factor B3 family protei...    26   8.8  
At5g62000.2 68418.m07783 transcriptional factor B3 family protei...    26   8.8  
At5g62000.1 68418.m07782 transcriptional factor B3 family protei...    26   8.8  
At3g12970.1 68416.m01616 expressed protein                             26   8.8  
At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containi...    26   8.8  

>At3g07660.1 68416.m00918 expressed protein
          Length = 841

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = +2

Query: 110 LKTNNMQVANGVSQQ---IYLNGPDQVVPAESYTTAIPGCHVKLRIAPRGLAAEPPISVP 280
           LK NN     G   +   +++ GP + VP+  Y     G HV    A  G  A P +  P
Sbjct: 735 LKENNGYSTTGQQSEALPVWITGPGRDVPSSFYGLQHHGQHVTYAPAQAGHVAFPGMYHP 794

Query: 281 G-LLSRTTARYP 313
           G  ++ T   +P
Sbjct: 795 GQAVTATGVHHP 806


>At5g52710.1 68418.m06543 heavy-metal-associated domain-containing
           protein  contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 451

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = +1

Query: 142 SQSTNILKRTGSSSARRKLHNSNSWMSRQTSHRPPRLSSGASYISAWITKSNYRQIS*RY 321
           S + ++ + T SSS     +++    SR +SH   R S   S   +  T ++Y       
Sbjct: 377 SSAMDLSQTTSSSSVAYSSYSTTPNSSRNSSHSRSRSSENLSQFQSNSTGNSYTSSQSNT 436

Query: 322 STGHKKG 342
           ++G K+G
Sbjct: 437 ASGSKQG 443


>At1g32740.1 68414.m04037 expressed protein
          Length = 312

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 118 KQHASGEWSQSTNILKRTGSSSAR-RKLHNSNSWMSRQTSHRPPRL 252
           +  A+G++   TN+L   GSS+ R R+   +N  +    SH+ P++
Sbjct: 31  QSQAAGDFLDQTNMLFNNGSSNQRKRRRETNNHQLLPMQSHQFPQV 76


>At3g01490.1 68416.m00073 protein kinase, putative similar to ATMRK1
           [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
          Length = 411

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = +1

Query: 118 KQHASGEWSQSTNILKRTGSSSARRKLHNSNSWMSRQTSHRPPRLSSGAS 267
           ++H S  W+         G  +     HN N++  RQ   + P L  G S
Sbjct: 29  QRHLSKAWTMEKRKSLSDGEDNVNNTRHNQNNFGHRQLVFQRPLLGGGYS 78


>At3g07890.1 68416.m00964 RabGAP/TBC domain-containing protein
           similar to plant adhesion molecule 1 [Arabidopsis
           thaliana] GI:3511223; contains Pfam profile PF00566: TBC
           domain
          Length = 400

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 173 DQVVPAESYTTAIPGCHVKLRI 238
           + V+  + YTT + GCHV+ R+
Sbjct: 231 ENVLVRDCYTTNLSGCHVEQRV 252


>At5g62000.3 68418.m07784 transcriptional factor B3 family protein /
           auxin-responsive factor, putative (ARF1) contains Pfam
           profile: PF02362 B3 DNA binding domain; identical to
           cDNA ARF1 (auxin response factor) binding protein
           GI:2245393
          Length = 859

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 215 GCHVKLRIAPRGLAAEPPISVPGLLSRTTARYPNATALATKKADGKW 355
           G  +KL  +P+ + A    S+ G  +   + YP    L+T+ A G W
Sbjct: 564 GLSLKLHESPK-VPAATDASLQGRCNVKYSEYPVLNGLSTENAGGNW 609


>At5g62000.2 68418.m07783 transcriptional factor B3 family protein /
           auxin-responsive factor, putative (ARF1) contains Pfam
           profile: PF02362 B3 DNA binding domain; identical to
           cDNA ARF1 (auxin response factor) binding protein
           GI:2245393
          Length = 859

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 215 GCHVKLRIAPRGLAAEPPISVPGLLSRTTARYPNATALATKKADGKW 355
           G  +KL  +P+ + A    S+ G  +   + YP    L+T+ A G W
Sbjct: 564 GLSLKLHESPK-VPAATDASLQGRCNVKYSEYPVLNGLSTENAGGNW 609


>At5g62000.1 68418.m07782 transcriptional factor B3 family protein /
           auxin-responsive factor, putative (ARF1) contains Pfam
           profile: PF02362 B3 DNA binding domain; identical to
           cDNA ARF1 (auxin response factor) binding protein
           GI:2245393
          Length = 859

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 215 GCHVKLRIAPRGLAAEPPISVPGLLSRTTARYPNATALATKKADGKW 355
           G  +KL  +P+ + A    S+ G  +   + YP    L+T+ A G W
Sbjct: 564 GLSLKLHESPK-VPAATDASLQGRCNVKYSEYPVLNGLSTENAGGNW 609


>At3g12970.1 68416.m01616 expressed protein
          Length = 381

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 175 SSSARRKLHNSNSWMSRQTSHRPPRLSSGASYISAWITKSNYRQIS*RYSTGHK 336
           ++S R  L+ S+   ++Q SH PP   S     S+    S+   +S   S+GH+
Sbjct: 153 TASFRHFLNRSSKSTAQQPSHPPPGKDSDILESSSTSISSSRLSLSSSSSSGHE 206


>At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 918

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 239 APRGLAAEPPISVPGLLSRTTARYPNATALATKKAD 346
           +PRG +A PP SV  +     ++ PN + L T K+D
Sbjct: 97  SPRG-SAPPPSSVATVAPAQLSQPPNFSPLQTPKSD 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,125,721
Number of Sequences: 28952
Number of extensions: 153950
Number of successful extensions: 402
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)