Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_P24
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...   113   3e-26
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   4.8  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    27   4.8  
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    26   6.3  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    26   8.4  

>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score =  113 bits (272), Expect = 3e-26
 Identities = 47/81 (58%), Positives = 63/81 (77%)
 Frame = +3

Query: 519 PVRVMKLLGVKILIATNAAGGLNPNYKIGDLMIVRDHINMMGFAGNNPLHGPNDERFGPR 698
           PVR+MK++GV++++ TNAAGGLN  +K+GDLMI++DHIN  G AG NPL GPN   FG R
Sbjct: 118 PVRLMKVMGVEVMVVTNAAGGLNQGFKVGDLMILKDHINFPGLAGMNPLRGPNAHEFGVR 177

Query: 699 FPPMNKAYNYEFRKIAKEVAK 761
           FPP++ AY+ E RK+  + AK
Sbjct: 178 FPPLSDAYDLELRKLVYDAAK 198



 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
 Frame = +2

Query: 242 YETLVETANFLLSRISE---KPXXXXXXXXXXXXLAESIADGV-RIPYEDIPNFPISTVE 409
           Y   +E   +++ ++ E   KP            LA  ++  V  +PYEDIP+F +S V 
Sbjct: 20  YIKALEAREYIIEQVPEELSKPKVAIICGSGLGTLASGLSAPVYEVPYEDIPHFHVSHVP 79

Query: 410 GHHGQLVFGHI--EGVSVVAMQGRFHYYEGYPL 502
           GH  +L F  +  + V  + + GR+H YEGYP+
Sbjct: 80  GHASKLYFAFLGEKRVPTMILAGRYHSYEGYPI 112


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 419 HDDPPLCLWESLEYLR-MVFLPRLLYFLLVN 330
           H D  +C+  S+ +L  +V +PR LYFLL +
Sbjct: 188 HKDAIICMMLSVIWLFCLVAIPRFLYFLLAS 218


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 280 ENIRETXHWHHLRLWDGFTSRKYSRRGKNTIRR 378
           +++RET   H+  +W G  SRK      N +RR
Sbjct: 670 KSLRETDFCHNASIWIGTESRKVLNIPLNDLRR 702


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 221 NEKTGYSYETLVETANFLLSRISEKP 298
           NE+ G+S E LV T  +L  ++ E P
Sbjct: 68  NEEKGFSLEALVATCIYLSCKVEECP 93


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 582 LNPNYKIGDLMIVRDHINMMGF 647
           +NPNY  G  + V DH+ + G+
Sbjct: 189 VNPNYITGSSLAVYDHVRIDGY 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,527,571
Number of Sequences: 5004
Number of extensions: 72734
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)