Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_P20
         (984 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0610 - 25449085-25453284                                         30   2.5  
04_03_0904 + 20717005-20718087                                         30   2.5  
08_02_1084 - 24232968-24234779                                         29   7.5  

>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = +2

Query: 779 PPTXQXHNPXXQPXXPPXH*NPPXRKXXXXXFPTXXXXPXSTPSXTXYPPXKXPP 943
           PP  + H P      PP   +PP  +      PT      S P  T  P  K PP
Sbjct: 566 PPVPEGHTPSPPKSGPPAGESPPTPESKASPPPTPEEYTPSPPKSTP-PAEKSPP 619



 Score = 29.5 bits (63), Expect = 4.3
 Identities = 17/58 (29%), Positives = 20/58 (34%)
 Frame = +2

Query: 770 SXXPPTXQXHNPXXQPXXPPXH*NPPXRKXXXXXFPTXXXXPXSTPSXTXYPPXKXPP 943
           S  PP  + H P      PP   +PP         PT    P +    T  PP   PP
Sbjct: 726 SPPPPAPEGHTPSPPKSSPPEEKSPPIP-------PTSHTSPPTPEEYTPSPPKSSPP 776



 Score = 28.7 bits (61), Expect = 7.5
 Identities = 19/60 (31%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
 Frame = +2

Query: 770 SXXPPTXQXHNPXXQPXXPPXH*NP--PXRKXXXXXFPTXXXXPXSTPSXTXYPPXKXPP 943
           S  PP  + H P      PP   +P  P  K      PT      S P  T  P  K PP
Sbjct: 627 SPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSPPPPTPEGHTPSPPKSTP-PTEKSPP 685



 Score = 28.7 bits (61), Expect = 7.5
 Identities = 18/60 (30%), Positives = 23/60 (38%)
 Frame = +3

Query: 609  SPPPNSXIXL*NPPTK*XXXLXXXXPPXQXXTPQTXXPTHX*PPQTTXPXXQTFPXXPPP 788
            SPPP + +    PP K         PP +  +P T  P    PP+   P   T     PP
Sbjct: 857  SPPPEAHVSSPPPPEK-------SPPPPETKSPPTLTPEISPPPEGKSPPSHTPESSSPP 909



 Score = 28.3 bits (60), Expect = 9.9
 Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
 Frame = +3

Query: 609  SPPPNSXIXL*NPPTK-*XXXLXXXXPPXQXXTPQTXXPTHX*PPQTTXPXXQTFPXXPP 785
            SPPP + + L  PP K          PP    +P    P    PP    P        PP
Sbjct: 1183 SPPPPAPVILPPPPVKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPPPAPVISPP 1242

Query: 786  P 788
            P
Sbjct: 1243 P 1243


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/53 (28%), Positives = 19/53 (35%)
 Frame = +2

Query: 782 PTXQXHNPXXQPXXPPXH*NPPXRKXXXXXFPTXXXXPXSTPSXTXYPPXKXP 940
           P    + P  +P  PP +   P         PT    P  TP+ T Y P   P
Sbjct: 244 PAPPTYKPQPKPNPPPTYKPQPKPTPTPYTPPTYKPQPKPTPTPTPYTPTPKP 296


>08_02_1084 - 24232968-24234779
          Length = 603

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 19/63 (30%), Positives = 22/63 (34%)
 Frame = +3

Query: 600 SXMSPPPNSXIXL*NPPTK*XXXLXXXXPPXQXXTPQTXXPTHX*PPQTTXPXXQTFPXX 779
           S   PPP+  +    PP      L    PP Q   P         PPQ + P     P  
Sbjct: 49  SSSQPPPSQQL----PPPSLPPPLPQKQPPSQQLPPPPQQQQP--PPQHSLPPPPPLPQA 102

Query: 780 PPP 788
           PPP
Sbjct: 103 PPP 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,827,435
Number of Sequences: 37544
Number of extensions: 304396
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2870111300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)