Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_P19
         (994 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       30   2.5  
03_01_0515 - 3864796-3865425                                           29   4.4  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 31/145 (21%), Positives = 35/145 (24%)
 Frame = +1

Query: 517 PSAXLXXSLSXXPEXXXTXXPQNPTXXASPXXXTFPPXNXXXXXGRXXRXASXXPSQXRP 696
           PS     ++S  P    +  P      ASP      P             A+   S   P
Sbjct: 255 PSTPAITAVSSVPRSSPSPAPAPAARPASPSPSLPLPPGRESPSRPQSIAAAAVASPAPP 314

Query: 697 XXKRXXQXXGXKXPXXXPXAXXAPPRPXTRXXXNARXPPXXTNXXXXXXARXGPXXXXKK 876
                        P   P A   PP P           P              P    KK
Sbjct: 315 PPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKK 374

Query: 877 XKPPPPXXXXXXXXPPXXXPXPXGS 951
             PPPP        PP     P GS
Sbjct: 375 GGPPPPPPKGGASRPPAAPGVPTGS 399


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 20/69 (28%), Positives = 21/69 (30%)
 Frame = +1

Query: 736 PXXXPXAXXAPPRPXTRXXXNARXPPXXTNXXXXXXARXGPXXXXKKXKPPPPXXXXXXX 915
           P   P A  +PP P T        PP          A  GP        PPPP       
Sbjct: 29  PAPSPEAEASPPSPPTEASPPPLAPPPSVTSSPPPPAA-GPLMPPP---PPPPSVTSSPP 84

Query: 916 XPPXXXPXP 942
            PP   P P
Sbjct: 85  PPPLPPPPP 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,764,311
Number of Sequences: 37544
Number of extensions: 245996
Number of successful extensions: 405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2905255520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)