Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_P18
         (936 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    83   7e-17
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    74   3e-14
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    66   5e-12
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    27   3.8  
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    27   3.8  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    27   3.8  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    27   3.8  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 82.6 bits (195), Expect = 7e-17
 Identities = 38/67 (56%), Positives = 50/67 (74%)
 Frame = +1

Query: 166 YSALILVDXXVAVTGXKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVGAA 345
           YSALIL D  + +T  K+ ++ KAA VDVEP W  +FAKALEG ++++L+ NIGSG GAA
Sbjct: 10  YSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGAGAA 69

Query: 346 PAAGWSA 366
           P AG +A
Sbjct: 70  PVAGGAA 76



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 440 SDDDMGFGLFD 472
           SD+DMGFGLFD
Sbjct: 99  SDEDMGFGLFD 109


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 36/64 (56%), Positives = 47/64 (73%)
 Frame = +1

Query: 166 YSALILVDXXVAVTGXKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVGAA 345
           YSALIL D  + +T  K+ ++ KAA VDVEP W  +FAKALEG ++++L+ NIGS   AA
Sbjct: 10  YSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGS-AAAA 68

Query: 346 PAAG 357
           PAAG
Sbjct: 69  PAAG 72



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 440 SDDDMGFGLFD 472
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 66.5 bits (155), Expect = 5e-12
 Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
 Frame = +1

Query: 166 YSALILVDXXVAVTGXKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS-GVGA 342
           Y+ALIL D  + +T  K+ ++ KA  V+VEP W  +FAKALEG ++++L+ NIGS G  +
Sbjct: 10  YAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGSAGAAS 69

Query: 343 APAA 354
           AP A
Sbjct: 70  APTA 73



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 440 SDDDMGFGLFD 472
           SD+DMGFGLFD
Sbjct: 99  SDEDMGFGLFD 109


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 440 SDDDMGFGLFD 472
           SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 440 SDDDMGFGLFD 472
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 440 SDDDMGFGLFD 472
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 440 SDDDMGFGLFD 472
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,156
Number of Sequences: 5004
Number of extensions: 29241
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)