Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_P15
         (916 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098500-1|AAC67400.2|  311|Caenorhabditis elegans Hypothetical ...    31   0.87 
Z81525-6|CAB82206.2|  346|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical p...    29   6.1  
AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical ...    29   6.1  
U55366-2|AAA97981.1|  156|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical...    28   8.1  
AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisome...    28   8.1  

>AF098500-1|AAC67400.2|  311|Caenorhabditis elegans Hypothetical
           protein F43B10.1 protein.
          Length = 311

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 703 FFFXXFXKXKXXGGGGXXKKKXXXXXXKKKKKKXXXGGGGGG 578
           F F    + +  GGGG            KKK++   GGGGGG
Sbjct: 257 FTFSPHRERERWGGGGGDDDAIKMSQFVKKKRRIEEGGGGGG 298



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 704 FFFXXFXKXKKXGGGGXXKKKXXXXXXXKKKKKKXXXGGGGG 579
           F F    + ++ GGGG            KKK++    GGGGG
Sbjct: 257 FTFSPHRERERWGGGGGDDDAIKMSQFVKKKRRIEEGGGGGG 298


>Z81525-6|CAB82206.2|  346|Caenorhabditis elegans Hypothetical
           protein F33A8.9 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = -2

Query: 240 PKGXYIFLKPPG--GGXXPXGTPGGGXXXGP 154
           PK  YI   PPG  G   P G PGG    GP
Sbjct: 227 PKNFYITSGPPGPPGPPGPPGNPGGIGPRGP 257


>Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical
           protein F47B8.13 protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 755 GGGGGGXXXXXXXXXXXXXXXXXPPPPPP 841
           GGGGGG                 PPPPPP
Sbjct: 15  GGGGGGGGGGGEAGYSGGAGVEAPPPPPP 43



 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 754 GGGGGGXXXXXXXXXXXXXXXXXXPPPPPP 843
           GGGGGG                  PPPPPP
Sbjct: 14  GGGGGGGGGGGGEAGYSGGAGVEAPPPPPP 43


>AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.9 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +3

Query: 756 GGGGGGVFXXXXXXXXXXXXXXXPPPPPP 842
           GGGGGG+                PPPPPP
Sbjct: 189 GGGGGGMGGGGGSGGSGGGSGRFPPPPPP 217



 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -1

Query: 841 GGGGGGXXXXXXXXXXXXXXXXTPPPPPP 755
           GGGGGG                 PPPPPP
Sbjct: 189 GGGGGGMGGGGGSGGSGGGSGRFPPPPPP 217


>U55366-2|AAA97981.1|  156|Caenorhabditis elegans Hypothetical
           protein F41F3.3 protein.
          Length = 156

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -1

Query: 469 GGGGGXXPXXXPXFXKXXGGVFSPXTKGGG 380
           GGGGG  P   P      GG  +P   GGG
Sbjct: 61  GGGGGCCPPPAPACGGGCGGGVAPAPIGGG 90


>AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical
           protein Y56A3A.27 protein.
          Length = 759

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 210 PGGGXXPXGTPGGGXXXGP 154
           PGGG  P   PGGG   GP
Sbjct: 621 PGGGGGPPRGPGGGGGGGP 639


>AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA
           topoisomerase III protein.
          Length = 759

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 210 PGGGXXPXGTPGGGXXXGP 154
           PGGG  P   PGGG   GP
Sbjct: 621 PGGGGGPPRGPGGGGGGGP 639


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,319,426
Number of Sequences: 27780
Number of extensions: 413084
Number of successful extensions: 7571
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3212
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)