Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_P12
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   0.94 
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   6.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   8.8  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 140 VLKWQKVYNPTGPQPRPRHGHRAVAIKDLMIVFGGGNEGIVHELHVFNTT 289
           V +W++VY P   QP   +  RA   +         ++G + E  VF+TT
Sbjct: 229 VSQWEEVYIPLYQQPERHYERRATPPQPDRT---SKDQGTIGESEVFDTT 275


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 566 ESDDPKNNIPRYLNDLYILGL 628
           E  DP  N   Y+  L++LGL
Sbjct: 54  EVHDPVTNSDTYIGFLFVLGL 74


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 12/49 (24%), Positives = 17/49 (34%)
 Frame = +2

Query: 542 YLFGGLANESDDPKNNIPRYLNDLYILGLYPNSSMTVWDIPLTYGQSPP 688
           Y +    N ++   NN   Y   LY      N       +P+  G  PP
Sbjct: 322 YKYSNYNNYNNYNNNNYNNYNKKLYYKNYIINIEQIPVPVPIYCGNFPP 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,790
Number of Sequences: 438
Number of extensions: 5372
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)