Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_P10
         (916 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   2.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   5.1  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   8.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.9  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 693 SETEEKDSTSMKNDHQETDNAS 758
           SETE+  S  + +D  E DN+S
Sbjct: 345 SETEQSTSMDLPSDQVEPDNSS 366


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 693 SETEEKDSTSMKNDHQETDNAS 758
           SETE+  S  + +D  E DN+S
Sbjct: 345 SETEQSTSMDLPSDQVEPDNSS 366


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 698 FTCVERNVPVPLEENDVKHCNGRGG 624
           F  +ERN  VP   N V +  G+GG
Sbjct: 83  FVTIERNNGVPSSLNVVTNKKGKGG 107


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/40 (22%), Positives = 20/40 (50%)
 Frame = -3

Query: 338 FPYLFLGLCTGSRLVXRKAAASRREETLSHSCRRLGCRIP 219
           F + + G      L+  + +   RE+ ++++CR L   +P
Sbjct: 416 FEHRYQGKFFDEELILGELSEKLREDVINYNCRSLVASVP 455


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/40 (22%), Positives = 20/40 (50%)
 Frame = -3

Query: 338 FPYLFLGLCTGSRLVXRKAAASRREETLSHSCRRLGCRIP 219
           F + + G      L+  + +   RE+ ++++CR L   +P
Sbjct: 384 FEHRYQGKFFDEELILGELSEKLREDVINYNCRSLVASVP 423


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 323 GRDKGNPWGRGGSR 364
           GR KG   G+GGSR
Sbjct: 79  GRGKGRGHGKGGSR 92



 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 320 QGRDKGNPWGRGGSRVNT 373
           +G  KG   GRGG+R  T
Sbjct: 84  RGHGKGGSRGRGGNRGRT 101


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 805 SWRPIFRFQCKTMTVRDALSV 743
           SWRPIFR    ++     LSV
Sbjct: 146 SWRPIFRQNWASLQPYKKLSV 166


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 426 SRISGRILRNADLIIRMCV 370
           SRIS RI RN  L+   C+
Sbjct: 34  SRISNRISRNRVLLRGQCI 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,308
Number of Sequences: 438
Number of extensions: 5071
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)