Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_P09
         (900 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   3.3  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   3.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   4.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.7  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   5.7  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.9  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 285 PSSLSPTPIQL*RCALREH 341
           P + +PT   + RCALR+H
Sbjct: 94  PQTSAPTGPPIVRCALRKH 112


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 505 DDLAQRCAQYKKDGCH 552
           D++A RCA  +++ CH
Sbjct: 161 DEIAIRCAFLERENCH 176


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
 Frame = +3

Query: 507  RPRPALRPVQEGRLPLRQVALRAEDRPQHPLVPS--YPGKRQCSRPLRFHLSE 659
            RP     P Q   +P   V +   D+P  P  P    P    C+   R  L E
Sbjct: 1073 RPTTTNWPTQGTTIPPPAVVMPEVDKPSQPCEPGQYVPDPHNCNAYYRCVLGE 1125


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 197 RKGYPRR*RIHRXQWESVCRTSAWRTQRRTV 289
           R+ YPR+ + H  QW   C     R +RR +
Sbjct: 42  RQPYPRQKKSHPPQWTWQCINQ--RCERRHI 70


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 273 HRGEPSSLSPTPIQ 314
           H GEP+ L+P  IQ
Sbjct: 217 HTGEPTDLTPEQIQ 230


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +3

Query: 426 HHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPAL-RPVQEGRLPLRQVALRAEDRPQHPLV 602
           HH  H  +Q      + G  MH  G    +P + +   +G+ P    A  A   P +P +
Sbjct: 178 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQGQQPPGNTA-AALPSPLYPWM 236

Query: 603 PS 608
            S
Sbjct: 237 RS 238


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +3

Query: 426 HHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPAL-RPVQEGRLPLRQVALRAEDRPQHPLV 602
           HH  H  +Q      + G  MH  G    +P + +   +G+ P    A  A   P +P +
Sbjct: 180 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQGQQPPGNTA-AALPSPLYPWM 238

Query: 603 PS 608
            S
Sbjct: 239 RS 240


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,096
Number of Sequences: 336
Number of extensions: 4608
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25030786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)