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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_P09
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81115-1|CAB03291.1|  365|Caenorhabditis elegans Hypothetical pr...   282   3e-76
D83738-1|BAA12091.1|  366|Caenorhabditis elegans aldolase Ce1 pr...   277   1e-74
U13070-15|AAC46646.1|  366|Caenorhabditis elegans Hypothetical p...   256   2e-68
D83739-1|BAA12092.1|  366|Caenorhabditis elegans aldolase Ce2 pr...   256   2e-68
U13070-14|AAM22057.1|  259|Caenorhabditis elegans Hypothetical p...   250   1e-66
Z81539-1|CAB04389.1|  228|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z82076-6|CAH10809.1|  450|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z82076-4|CAB04937.2|  438|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    29   6.0  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    29   6.0  
AF016439-1|AAB65898.3|  721|Caenorhabditis elegans Hypothetical ...    29   6.0  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p...    28   7.9  
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue...    28   7.9  
AL132952-11|CAB61148.1|  136|Caenorhabditis elegans Hypothetical...    28   7.9  
AC024775-8|AAK68458.1|  347|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z81115-1|CAB03291.1|  365|Caenorhabditis elegans Hypothetical
           protein T05D4.1 protein.
          Length = 365

 Score =  282 bits (691), Expect = 3e-76
 Identities = 140/222 (63%), Positives = 163/222 (73%), Gaps = 1/222 (0%)
 Frame = +1

Query: 235 TMGKRLQDIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLL 414
           +M KRL  IG+ENTEENRR+YRQLLF++ A L++ ISGVI+FHET YQK DDG P  +LL
Sbjct: 39  SMDKRLNSIGLENTEENRRKYRQLLFTAGADLNKYISGVIMFHETFYQKTDDGKPFTALL 98

Query: 415 EKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNT 594
           +++GIIPGIKVDKGVVP+ G+  E TTQGLDDL  RCAQYKKDG  FAKWRCV KI   T
Sbjct: 99  QEQGIIPGIKVDKGVVPMAGTIGEGTTQGLDDLNARCAQYKKDGAQFAKWRCVHKISSTT 158

Query: 595 PSYQAIQENANVLARYASICQSQRIVPIVEPEVLPDGEHDLXRXXXXXXXXXXXXXXXLN 774
           PS  A++E A+ LARYASICQ   +VPIVEPE+LPDGEH L R               LN
Sbjct: 159 PSVTALKEIASNLARYASICQQNGLVPIVEPEILPDGEHCLARGQKITETVLSYVYHALN 218

Query: 775 DHHVYLEGTLLKPNMVTAGQSCKKTYTPN-DVXRATVTXLLR 897
           +HHV+LEGTLLKPNMVT+GQS       N D+  ATVT L R
Sbjct: 219 EHHVFLEGTLLKPNMVTSGQSFTGEKPSNADIGLATVTALQR 260



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 23/38 (60%), Positives = 29/38 (76%)
 Frame = +3

Query: 120 MSTYFQYPTPELQEELKKIAQAIVAPAKGILAADESTG 233
           M++Y Q+ T   ++EL+ IA AIV P KGILAADESTG
Sbjct: 1   MASYSQFLTKAQEDELRSIANAIVTPGKGILAADESTG 38


>D83738-1|BAA12091.1|  366|Caenorhabditis elegans aldolase Ce1
           protein.
          Length = 366

 Score =  277 bits (678), Expect = 1e-74
 Identities = 139/223 (62%), Positives = 163/223 (73%), Gaps = 2/223 (0%)
 Frame = +1

Query: 235 TMGKRLQDIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLL 414
           +M KRL  IG+ENTEENRR+YRQLLF++ A L++ ISGVI+FHET YQK DDG P  +LL
Sbjct: 39  SMDKRLNSIGLENTEENRRKYRQLLFTAGADLNKYISGVIMFHETFYQKTDDGKPFTALL 98

Query: 415 EKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNT 594
           +++GIIPGIKVDKGVVP+ G+  E TTQGLDDL  RCAQYKKDG  FAKWRCV KI   T
Sbjct: 99  QEQGIIPGIKVDKGVVPMAGTIGEGTTQGLDDLNARCAQYKKDGAQFAKWRCVHKISSTT 158

Query: 595 PSYQAIQENA-NVLARYASICQSQRIVPIVEPEVLPDGEHDLXRXXXXXXXXXXXXXXXL 771
           PS  A++E A N+ +RYASICQ   +VPIVEPE+LPDGEH L R               L
Sbjct: 159 PSVTALKEIASNLGSRYASICQQNGLVPIVEPEILPDGEHCLARGQKITETVLSYVYHAL 218

Query: 772 NDHHVYLEGTLLKPNMVTAGQSCKKTYTPN-DVXRATVTXLLR 897
           N+HHV+LEGTLLKPNMVT+GQS       N D+  ATVT L R
Sbjct: 219 NEHHVFLEGTLLKPNMVTSGQSFTGEKPSNADIGLATVTALQR 261



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 23/38 (60%), Positives = 29/38 (76%)
 Frame = +3

Query: 120 MSTYFQYPTPELQEELKKIAQAIVAPAKGILAADESTG 233
           M++Y Q+ T   ++EL+ IA AIV P KGILAADESTG
Sbjct: 1   MASYSQFLTKAQEDELRSIANAIVTPGKGILAADESTG 38


>U13070-15|AAC46646.1|  366|Caenorhabditis elegans Hypothetical
           protein F01F1.12a protein.
          Length = 366

 Score =  256 bits (627), Expect = 2e-68
 Identities = 130/221 (58%), Positives = 154/221 (69%)
 Frame = +1

Query: 235 TMGKRLQDIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLL 414
           T+GKRL  I +EN E NR++YRQLLF++   L+++ISGVIL+ ET +Q  D G     LL
Sbjct: 43  TIGKRLDAINLENNETNRQKYRQLLFTTPN-LNQHISGVILYEETFHQSTDKGEKFTDLL 101

Query: 415 EKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNT 594
            K+GI+PGIK+D GVVPL G+  E TTQGLD LA+R A +KK GC FAKWRCVL IG +T
Sbjct: 102 IKQGIVPGIKLDLGVVPLAGTIGEGTTQGLDKLAERAAAFKKGGCGFAKWRCVLNIGTHT 161

Query: 595 PSYQAIQENANVLARYASICQSQRIVPIVEPEVLPDGEHDLXRXXXXXXXXXXXXXXXLN 774
           PS+  + ENANVLARYASICQ+  +VPIVEPEVL DGEHDL R               L 
Sbjct: 162 PSHLGMLENANVLARYASICQANGLVPIVEPEVLCDGEHDLARAQKVTEQVLAFVYKALA 221

Query: 775 DHHVYLEGTLLKPNMVTAGQSCKKTYTPNDVXRATVTXLLR 897
           DHHVYLEGTLLKPNMVT GQS     +   +  ATVT L R
Sbjct: 222 DHHVYLEGTLLKPNMVTPGQSSASKASHEAIGLATVTALRR 262



 Score = 37.5 bits (83), Expect = 0.013
 Identities = 20/34 (58%), Positives = 23/34 (67%)
 Frame = +3

Query: 144 TPELQEELKKIAQAIVAPAKGILAADESTGYNGK 245
           T   ++EL +IA  IV   KGILAADESTG  GK
Sbjct: 13  TQAQKDELHQIALKIVQDGKGILAADESTGTIGK 46


>D83739-1|BAA12092.1|  366|Caenorhabditis elegans aldolase Ce2
           protein.
          Length = 366

 Score =  256 bits (627), Expect = 2e-68
 Identities = 130/221 (58%), Positives = 154/221 (69%)
 Frame = +1

Query: 235 TMGKRLQDIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLL 414
           T+GKRL  I +EN E NR++YRQLLF++   L+++ISGVIL+ ET +Q  D G     LL
Sbjct: 43  TIGKRLDAINLENNETNRQKYRQLLFTTPN-LNQHISGVILYEETFHQSTDKGEKFTDLL 101

Query: 415 EKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNT 594
            K+GI+PGIK+D GVVPL G+  E TTQGLD LA+R A +KK GC FAKWRCVL IG +T
Sbjct: 102 IKQGIVPGIKLDLGVVPLAGTIGEGTTQGLDKLAERAAAFKKGGCGFAKWRCVLNIGTHT 161

Query: 595 PSYQAIQENANVLARYASICQSQRIVPIVEPEVLPDGEHDLXRXXXXXXXXXXXXXXXLN 774
           PS+  + ENANVLARYASICQ+  +VPIVEPEVL DGEHDL R               L 
Sbjct: 162 PSHLGMLENANVLARYASICQANGLVPIVEPEVLCDGEHDLARAQKVTEQVLAFVYKALA 221

Query: 775 DHHVYLEGTLLKPNMVTAGQSCKKTYTPNDVXRATVTXLLR 897
           DHHVYLEGTLLKPNMVT GQS     +   +  ATVT L R
Sbjct: 222 DHHVYLEGTLLKPNMVTPGQSSASKASHEAIGLATVTALRR 262



 Score = 37.5 bits (83), Expect = 0.013
 Identities = 20/34 (58%), Positives = 23/34 (67%)
 Frame = +3

Query: 144 TPELQEELKKIAQAIVAPAKGILAADESTGYNGK 245
           T   ++EL +IA  IV   KGILAADESTG  GK
Sbjct: 13  TQAQKDELHQIALKIVQDGKGILAADESTGTIGK 46


>U13070-14|AAM22057.1|  259|Caenorhabditis elegans Hypothetical
           protein F01F1.12b protein.
          Length = 259

 Score =  250 bits (611), Expect = 1e-66
 Identities = 124/201 (61%), Positives = 146/201 (72%)
 Frame = +1

Query: 235 TMGKRLQDIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLL 414
           T+GKRL  I +EN E NR++YRQLLF++   L+++ISGVIL+ ET +Q  D G     LL
Sbjct: 43  TIGKRLDAINLENNETNRQKYRQLLFTTPN-LNQHISGVILYEETFHQSTDKGEKFTDLL 101

Query: 415 EKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNT 594
            K+GI+PGIK+D GVVPL G+  E TTQGLD LA+R A +KK GC FAKWRCVL IG +T
Sbjct: 102 IKQGIVPGIKLDLGVVPLAGTIGEGTTQGLDKLAERAAAFKKGGCGFAKWRCVLNIGTHT 161

Query: 595 PSYQAIQENANVLARYASICQSQRIVPIVEPEVLPDGEHDLXRXXXXXXXXXXXXXXXLN 774
           PS+  + ENANVLARYASICQ+  +VPIVEPEVL DGEHDL R               L 
Sbjct: 162 PSHLGMLENANVLARYASICQANGLVPIVEPEVLCDGEHDLARAQKVTEQVLAFVYKALA 221

Query: 775 DHHVYLEGTLLKPNMVTAGQS 837
           DHHVYLEGTLLKPNMVT GQS
Sbjct: 222 DHHVYLEGTLLKPNMVTPGQS 242



 Score = 37.5 bits (83), Expect = 0.013
 Identities = 20/34 (58%), Positives = 23/34 (67%)
 Frame = +3

Query: 144 TPELQEELKKIAQAIVAPAKGILAADESTGYNGK 245
           T   ++EL +IA  IV   KGILAADESTG  GK
Sbjct: 13  TQAQKDELHQIALKIVQDGKGILAADESTGTIGK 46


>Z81539-1|CAB04389.1|  228|Caenorhabditis elegans Hypothetical
           protein F46A8.3 protein.
          Length = 228

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +3

Query: 702 WRARPGXRPEXD*XRS----GRRVQGAERPPRVPR-GDTPQ 809
           +R R G RP+ D   S    GRR  G +RPPR PR   TP+
Sbjct: 47  YRPRGGKRPKFDDDSSDDYSGRRGGGRQRPPRPPRPAPTPK 87


>Z82076-6|CAH10809.1|  450|Caenorhabditis elegans Hypothetical
           protein W07G1.5b protein.
          Length = 450

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/60 (25%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = +3

Query: 141 PTPELQEELKKIAQAIVAPAKGILAADESTGYNGKAFAGHRRGE--HRGEPSSLSPTPIQ 314
           PTP  ++++KK+A+  ++ + G+ +    + YN +  + ++ G+  HRG    ++P  I+
Sbjct: 2   PTPSTKKKVKKVAEDPLS-SSGVSSLSGISSYNIRKISIYKNGDRYHRGVKFVINPRVIK 60


>Z82076-4|CAB04937.2|  438|Caenorhabditis elegans Hypothetical
           protein W07G1.5a protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/60 (25%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = +3

Query: 141 PTPELQEELKKIAQAIVAPAKGILAADESTGYNGKAFAGHRRGE--HRGEPSSLSPTPIQ 314
           PTP  ++++KK+A+  ++ + G+ +    + YN +  + ++ G+  HRG    ++P  I+
Sbjct: 2   PTPSTKKKVKKVAEDPLS-SSGVSSLSGISSYNIRKISIYKNGDRYHRGVKFVINPRVIK 60


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform a
           protein.
          Length = 1081

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 45/197 (22%), Positives = 70/197 (35%), Gaps = 3/197 (1%)
 Frame = +3

Query: 264 RGEHRGEPSSLSPTPIQL*RCALREHLWCDPVPRDPLPEG*RWNASGLPAGEEGHHPRHQ 443
           +G  R + ++  PT  Q+ + + +       VPR P P          P+   G HP  Q
Sbjct: 140 QGASREQGNAHQPTAGQIPQSSNQPAQQTHNVPRMPQP----LQQVPHPSPVRGSHPAAQ 195

Query: 444 GRQGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQVALRAEDRPQHPLVPSYPGKR 623
             Q      RI + +  P    P   ++ V+   +   Q+  +A  R       + P  R
Sbjct: 196 QVQNAPQ--RIPQHVPMPQGVAPHQVIQQVRAPNIGASQMVQQAPSRGH---TGAAPASR 250

Query: 624 QCSRPLRFHLSEPTHRADCRARSLT*WRARPGXRPEXD*XRSGRRVQGAERPPRV-PRGD 800
              +P+  H     H+A  +    T  R RP    +       R  Q    P  V P   
Sbjct: 251 MAQQPVPLHQGVAPHQAAPQTIQQTPARGRPA-NAQLAQNAQQRNPQQVPMPQGVAPHHI 309

Query: 801 TPQA--QHGDGRSVVQE 845
            PQA   HG    + Q+
Sbjct: 310 PPQALGPHGAAPQMTQQ 326


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform b
           protein.
          Length = 1647

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 45/197 (22%), Positives = 70/197 (35%), Gaps = 3/197 (1%)
 Frame = +3

Query: 264 RGEHRGEPSSLSPTPIQL*RCALREHLWCDPVPRDPLPEG*RWNASGLPAGEEGHHPRHQ 443
           +G  R + ++  PT  Q+ + + +       VPR P P          P+   G HP  Q
Sbjct: 140 QGASREQGNAHQPTAGQIPQSSNQPAQQTHNVPRMPQP----LQQVPHPSPVRGSHPAAQ 195

Query: 444 GRQGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQVALRAEDRPQHPLVPSYPGKR 623
             Q      RI + +  P    P   ++ V+   +   Q+  +A  R       + P  R
Sbjct: 196 QVQNAPQ--RIPQHVPMPQGVAPHQVIQQVRAPNIGASQMVQQAPSRGH---TGAAPASR 250

Query: 624 QCSRPLRFHLSEPTHRADCRARSLT*WRARPGXRPEXD*XRSGRRVQGAERPPRV-PRGD 800
              +P+  H     H+A  +    T  R RP    +       R  Q    P  V P   
Sbjct: 251 MAQQPVPLHQGVAPHQAAPQTIQQTPARGRPA-NAQLAQNAQQRNPQQVPMPQGVAPHHI 309

Query: 801 TPQA--QHGDGRSVVQE 845
            PQA   HG    + Q+
Sbjct: 310 PPQALGPHGAAPQMTQQ 326


>AF016439-1|AAB65898.3|  721|Caenorhabditis elegans Hypothetical
           protein R02F11.2 protein.
          Length = 721

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -3

Query: 586 GRSSARNATWRSGSRPSCTGRSAGR---GRPDPGWCIRL 479
           GR    N     G RPS +G  AG     RP  GWC+++
Sbjct: 253 GRPRPGNGGGGGGVRPSNSGCDAGWRRFNRPSGGWCVKV 291


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 24.6 bits (51), Expect(2) = 7.9
 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
 Frame = +3

Query: 396 ASGLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGRP-----RPALRPVQEGRLPLRQ 560
           A+ + A ++G      G  G   A   G    +PG+G P      P   P   G  P   
Sbjct: 422 AAAVAAAQQGDQKSQHGAPGGSGAPPPGPPGAYPGNGAPGGPPGGPPQFPGHPGMDPNYH 481

Query: 561 VALRAEDRPQHPLVPSYP 614
              +    P HP  P YP
Sbjct: 482 YYQQHGMMPPHPGHPGYP 499



 Score = 21.8 bits (44), Expect(2) = 7.9
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 714 PGXRPEXD*XRSGRRVQGAERPPRVPRGDTPQAQ 815
           PG  P+     S  +  G +RPP  P G  P  Q
Sbjct: 496 PGYPPQHMNAFSPGQYPGHQRPPGGPGGPPPGPQ 529


>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
           protein T04H1.4b protein.
          Length = 1312

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = +1

Query: 223 NPPXTMGKRLQ-DIGV-----ENTEENRRRYRQLLFSSDA 324
           N    + + LQ D+GV     E TEEN +RY QL+  SD+
Sbjct: 777 NAKLKLAEDLQTDVGVIQQLYEQTEENEKRYEQLVSESDS 816


>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
           protein T04H1.4a protein.
          Length = 1298

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = +1

Query: 223 NPPXTMGKRLQ-DIGV-----ENTEENRRRYRQLLFSSDA 324
           N    + + LQ D+GV     E TEEN +RY QL+  SD+
Sbjct: 763 NAKLKLAEDLQTDVGVIQQLYEQTEENEKRYEQLVSESDS 802


>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
           ceRAD50 protein.
          Length = 1298

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = +1

Query: 223 NPPXTMGKRLQ-DIGV-----ENTEENRRRYRQLLFSSDA 324
           N    + + LQ D+GV     E TEEN +RY QL+  SD+
Sbjct: 763 NAKLKLAEDLQTDVGVIQQLYEQTEENEKRYEQLVSESDS 802


>AL132952-11|CAB61148.1|  136|Caenorhabditis elegans Hypothetical
           protein Y51H4A.16 protein.
          Length = 136

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +1

Query: 439 IKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQE 618
           ++V +  V L  +  E T + L  LAQ+  ++ +D      W+C+   G +T + ++I+E
Sbjct: 22  VRVVERAVALHKNSKEKTNEKL--LAQKSGKWARDAESRNTWKCIRAPGAHTHTGESIKE 79

Query: 619 N 621
           +
Sbjct: 80  S 80


>AC024775-8|AAK68458.1|  347|Caenorhabditis elegans Hypothetical
           protein Y41D4A.8 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 388 DGTPLVSLLEKKGII--PGIKVDKGVVPLFGSEDECT 492
           D +PLVS+L   G+I  P + +    VPLF  ED CT
Sbjct: 10  DPSPLVSVL---GLIKSPDLMIGSTEVPLFEEEDMCT 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,167,787
Number of Sequences: 27780
Number of extensions: 455630
Number of successful extensions: 1443
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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