Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_P08
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   268   5e-73
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    70   4e-13
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    48   2e-06
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    28   2.1  
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch...    26   6.3  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   8.3  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  268 bits (658), Expect = 5e-73
 Identities = 126/168 (75%), Positives = 148/168 (88%)
 Frame = +3

Query: 297 GAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFG 476
           GA  +A + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNLE D VG V+FG
Sbjct: 46  GAYNQAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNLEADTVGCVLFG 105

Query: 477 NDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGII 656
           ND+L++EG++VKRT  IVDVPVGE +LGRVVDALGNPIDGKGPI T  R RV +KAPGI+
Sbjct: 106 NDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTERRRVQLKAPGIL 165

Query: 657 PRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTXLAIDTIIN 800
           PR SV EPMQTG+KA+DS+VPIGRGQRELIIGDRQTGKT +A+DTI+N
Sbjct: 166 PRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAIALDTILN 213



 Score = 33.9 bits (74), Expect = 0.031
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +1

Query: 832 KKLYCIYVAIGXXKSTVXQ 888
           KKLYC+YVA+G  +STV Q
Sbjct: 225 KKLYCVYVAVGQKRSTVAQ 243


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 70.1 bits (164), Expect = 4e-13
 Identities = 38/113 (33%), Positives = 61/113 (53%)
 Frame = +3

Query: 462 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 641
           + + G + L++ G  V  TG+ + +PVG   LGR+++ +G P+D +GPI       +   
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHAD 166

Query: 642 APGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTXLAIDTIIN 800
           AP    + +  E ++TGIK VD L P  RG +  + G    GKT + I  +IN
Sbjct: 167 APSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGAGVGKT-VFIQELIN 218


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
 Frame = +3

Query: 516 TGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIP--RVSVREPMQT 689
           TG  + +PV E +LGRV +  G PID KGP +  +   + I    I P  R+   E +QT
Sbjct: 92  TGHSMRIPVSEDMLGRVFNGSGLPID-KGP-NLLAEDYLDINGSPINPYARIYPEEMIQT 149

Query: 690 GIKAVDSLVPIGRGQR 737
           GI ++D L  I RGQ+
Sbjct: 150 GISSIDGLNSIARGQK 165


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 767 TSLTVTNDQLTLTTANWYQRVNSLDTSLHRLTHRHPGNDT 648
           TS   ++  L  +  N  QR++SLD+S       HPGN T
Sbjct: 154 TSDAYSSSILENSPPNKVQRLSSLDSSQDSFQEEHPGNVT 193


>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 333

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +3

Query: 588 IDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTG 767
           +D K PI+T  +        G I  V + E     IK   ++VPI   + E  +  R   
Sbjct: 125 VDHKVPIETTMKALKAFVDSGEISCVGLSEASAESIKRALAIVPIAAVETEYSLFSRDIE 184

Query: 768 KTXLAIDT 791
           K  + +DT
Sbjct: 185 KNGI-LDT 191


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 402 PSPQPGCSSSHKHERYHHQCSRH-DQSLLDQPWAR 301
           P P  G    HK  ++   CS H D S+ ++P A+
Sbjct: 405 PVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAK 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,421,489
Number of Sequences: 5004
Number of extensions: 69714
Number of successful extensions: 225
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)