Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_P07
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.69 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.5  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   8.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   8.5  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -2

Query: 353 LIDRVSFKELSCKTPALLVFNP*KSQVKTHLMNNHSTKSLSIKLNTNKTDVFNLK 189
           ++DR S       +P+LL   P +   K    NNH     + KLN  + +  N K
Sbjct: 32  IVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCNQDTEKLNQLEIESDNSK 86


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 734 EGWNNFIARHTIA 696
           EGW + +ARH +A
Sbjct: 367 EGWIHHLARHAVA 379


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 43  TRTRMFVLAVRVLSSASIIKLY 108
           T  RMFVLA  + +  +I +LY
Sbjct: 250 TDKRMFVLAASIKAGYTIDRLY 271


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 494 RRARHVVTQTVLIFILLTVCIVGFMHG 414
           + + + VTQ +LI ++L   IVG + G
Sbjct: 32  KNSPYTVTQAILIALVLGSIIVGTVIG 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,152
Number of Sequences: 438
Number of extensions: 4713
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)