Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_P05
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   6.5  
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||...    26   8.6  
SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|...    26   8.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = -3

Query: 826 PEPLASRXRCTEPAGRACARRSLTSRLALPAPHAGSTYTCPPTGRGRP 683
           P P + R R   P G   +  SL      P  +A  +   PP GR  P
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP 361


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
 Frame = +1

Query: 94  CRCCAKNASASA-QVASHSGVDSERANSMT--IARVPPMWRSVRPAAEIANAYWSTSSCS 264
           C  C  N +    Q    S  DS    S T  +AR+  +   V    +I    WS+ S  
Sbjct: 442 CSLCGFNRTQPLRQFEFRSRPDSTSHASCTYCVARLRSVCNFVAFLHQICKGVWSSCSLE 501

Query: 265 KSWTAC 282
           K+W  C
Sbjct: 502 KAWDEC 507


>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 483 SDVHALRSAFVQVALVESPEESESTNRHSK 394
           SDV   +S   QVAL+E   E E   RH +
Sbjct: 185 SDVAISQSTIQQVALMEEQGEDEQAIRHER 214


>SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 207

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 347 W*LMGLVALPGGSAADPTLIGAQAV 273
           W  MG++ LPG +  + ++IGA AV
Sbjct: 158 WIGMGVIVLPGVTIGEGSVIGAGAV 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,261,073
Number of Sequences: 5004
Number of extensions: 60857
Number of successful extensions: 203
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)