Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_P02
         (961 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   105   1e-23
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   104   2e-23
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    29   1.3  
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    27   5.2  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  105 bits (251), Expect = 1e-23
 Identities = 53/101 (52%), Positives = 68/101 (67%)
 Frame = +2

Query: 113 PXXNRVAIYEYLLKEGVXVAKKDYHAPKHTELEKIPNLXVIKAMQSLKSRXYVKEQFAWR 292
           P  NR AI++ L ++GV VAKKD++ PKH E+  +PNL VIKA QSL SR Y+K ++ W 
Sbjct: 4   PKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRYNWG 62

Query: 293 HFDWYLTXEGXEYLTIFLXLPPEIVPATLKRSLRTETVRRG 415
            F + LT EG EYL  +L LP E+VPAT KR +R    R G
Sbjct: 63  WFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPRAG 103


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  104 bits (250), Expect = 2e-23
 Identities = 53/101 (52%), Positives = 67/101 (66%)
 Frame = +2

Query: 113 PXXNRVAIYEYLLKEGVXVAKKDYHAPKHTELEKIPNLXVIKAMQSLKSRXYVKEQFAWR 292
           P  NR AI++ L  +GV VAKKD++ PKH E+  +PNL VIKA QSL SR Y+K ++ W 
Sbjct: 4   PKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRYNWG 62

Query: 293 HFDWYLTXEGXEYLTIFLXLPPEIVPATLKRSLRTETVRRG 415
            F + LT EG EYL  +L LP E+VPAT KR +R    R G
Sbjct: 63  WFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPRAG 103


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 441 TRSAEDRSAYRRTPAAPGVAPHDKKADVRSTLS 539
           TRS E R  YR  P A    PH  + +  S+LS
Sbjct: 473 TRSREWRRRYRVAPPAENEKPHTSRTNTASSLS 505


>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -1

Query: 463 DLSSAERVGASGRPTR 416
           DLSSAERV A GRP +
Sbjct: 221 DLSSAERVVAGGRPLK 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,345
Number of Sequences: 5004
Number of extensions: 35138
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)