Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_P02
         (961 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389...   112   3e-25
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699...   112   3e-25
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191...   108   6e-24
12_02_0020 - 12388777-12389062,12389637-12389818                       31   1.0  
03_05_0732 - 27232299-27232535,27232717-27232746,27233094-272331...    28   1.0  
06_01_1169 + 9996068-9996265,9996356-9998589,9998675-9998926,999...    29   4.2  

>04_03_0970 +
           21338072-21338074,21338192-21338240,21338688-21338970,
           21339570-21339705,21339761-21339769
          Length = 159

 Score =  112 bits (270), Expect = 3e-25
 Identities = 52/94 (55%), Positives = 69/94 (73%)
 Frame = +2

Query: 113 PXXNRVAIYEYLLKEGVXVAKKDYHAPKHTELEKIPNLXVIKAMQSLKSRXYVKEQFAWR 292
           P  NR  I +YL +EGV  AKKDY+  KH +++ +PNL VIK MQS KS+ YV+E F+W+
Sbjct: 4   PKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETFSWQ 62

Query: 293 HFDWYLTXEGXEYLTIFLXLPPEIVPATLKRSLR 394
           ++ WYLT +G E+L  +L LP EIVPATLK+S R
Sbjct: 63  YYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSAR 96


>02_04_0177 +
           20669053-20669055,20669150-20669198,20669680-20669962,
           20670526-20670661,20671014-20671094
          Length = 183

 Score =  112 bits (270), Expect = 3e-25
 Identities = 52/94 (55%), Positives = 69/94 (73%)
 Frame = +2

Query: 113 PXXNRVAIYEYLLKEGVXVAKKDYHAPKHTELEKIPNLXVIKAMQSLKSRXYVKEQFAWR 292
           P  NR  I +YL +EGV  AKKDY+  KH +++ +PNL VIK MQS KS+ YV+E F+W+
Sbjct: 4   PKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETFSWQ 62

Query: 293 HFDWYLTXEGXEYLTIFLXLPPEIVPATLKRSLR 394
           ++ WYLT +G E+L  +L LP EIVPATLK+S R
Sbjct: 63  YYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSAR 96


>01_07_0270 -
           42417782-42417850,42418207-42418342,42418826-42419108,
           42419459-42419507,42419614-42419616
          Length = 179

 Score =  108 bits (260), Expect = 6e-24
 Identities = 51/100 (51%), Positives = 69/100 (69%)
 Frame = +2

Query: 122 NRVAIYEYLLKEGVXVAKKDYHAPKHTELEKIPNLXVIKAMQSLKSRXYVKEQFAWRHFD 301
           NR  I +YL  EGV  AKKDY+  KH +++ +PNL VIK MQS KS+ YV+E F+W+H+ 
Sbjct: 7   NRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETFSWQHYY 65

Query: 302 WYLTXEGXEYLTIFLXLPPEIVPATLKRSLRTETVRRGPG 421
           WYLT +G E+L  +L LP E+VP TLK+S +  +   G G
Sbjct: 66  WYLTNDGIEHLRSYLNLPSEVVPNTLKKSAKPPSRPFGSG 105


>12_02_0020 - 12388777-12389062,12389637-12389818
          Length = 155

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 378 LSAHYVQRXYAVALVGRPDAPTRSAEDRSAYRRTPAAP 491
           ++A +     A A++GRP    R  E+RS  +RTP+ P
Sbjct: 33  VAAAHADADAAAAVIGRPKGEGREWEERSRSQRTPSPP 70


>03_05_0732 -
           27232299-27232535,27232717-27232746,27233094-27233155,
           27233975-27234005,27234618-27234713,27234881-27234969,
           27235687-27236263
          Length = 373

 Score = 28.3 bits (60), Expect(2) = 1.0
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 586 PXPXXQYPKLXX*PTQXTXXRKXXRIPXSPPXPPXXPP 699
           P P  Q+P     P      R+   +P  PP PP  PP
Sbjct: 29  PPPQQQHPD----PLNSVWIRRLHLLPHQPPPPPPPPP 62



 Score = 21.8 bits (44), Expect(2) = 1.0
 Identities = 10/35 (28%), Positives = 12/35 (34%)
 Frame = +1

Query: 673 PPXPPXXPPXNXXXXXXXRPLNPXPXXXXXXXTPI 777
           PP PP   P         RPL   P       +P+
Sbjct: 83  PPPPPMGAPGFGPFRWSPRPLRGAPLAAWDAASPV 117


>06_01_1169 +
           9996068-9996265,9996356-9998589,9998675-9998926,
           9999007-9999117,9999207-9999288,9999563-9999754
          Length = 1022

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 15/56 (26%), Positives = 17/56 (30%)
 Frame = +1

Query: 625 PTQXTXXRKXXRIPXSPPXPPXXPPXNXXXXXXXRPLNPXPXXXXXXXTPIXNSPP 792
           P      R   R P  PP P   PP          P +P          P+  SPP
Sbjct: 582 PPSPPPLRSPPRQPTPPPSPSQQPPLPTPQPVQASPTSPTKQHAPPAPPPVQTSPP 637


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,383,012
Number of Sequences: 37544
Number of extensions: 328077
Number of successful extensions: 1506
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2776393380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)