Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_P02
         (961 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   111   7e-25
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  111 bits (267), Expect = 7e-25
 Identities = 56/105 (53%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
 Frame = +2

Query: 113 PXXNRVAIYEYLLKEGVXVAKKDYHAPKHTELEKIPNLXVIKAMQSLKSRXYVKEQFAWR 292
           P  +   IYEYL  EGV VAKKD++A  H  +E + NL VIK ++SL SR  VKEQFAWR
Sbjct: 4   PKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQFAWR 63

Query: 293 HFDWYLTXEGXEYLTIFLXLPPEIVPATLK---RSLRTETVRRGP 418
           H+ WYLT  G  YL  +L LP EIVPAT+K   R +R     R P
Sbjct: 64  HYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPHEDRAP 108


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = -1

Query: 793 WEGNXRWGCXPKXXKXXXDSGGGXPXXAXXXKGGXRXGGGDXW 665
           W     WG  P         G G P       G  R GGG  W
Sbjct: 22  WGPPSPWGFRPSPFFGGRSGGWGRPGWGGGGPGWGRGGGGSGW 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,177,519
Number of Sequences: 27780
Number of extensions: 240210
Number of successful extensions: 751
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)