Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_O23
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0444 + 3141018-3141503,3141967-3142066,3142940-3142980           33   0.41 
06_01_0804 + 6038640-6040262                                           29   6.6  
07_01_0331 + 2343570-2344064                                           28   8.8  

>06_01_0444 + 3141018-3141503,3141967-3142066,3142940-3142980
          Length = 208

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = +3

Query: 480 DDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVL-GVGTNWNGEHMAF 656
           DD R      +D+ S   +W +  L  N      + +    +YL       +WN E +  
Sbjct: 24  DDDRSGVSLQQDRASVHAAWAVHILHFNGGDVLMLHSAANGRYLAAYRAEGSWNVERL-- 81

Query: 657 GVNSVDSFRAQWYLQPAKYDNDVL 728
            +N + S    WY   ++Y +DVL
Sbjct: 82  NLNRLPSLTFSWYALGSRYGDDVL 105


>06_01_0804 + 6038640-6040262
          Length = 540

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -2

Query: 190 AAPPEMXLGTSEAAAXRDATKRQRXNESGLQLWSGEAXVXPKNETSGKXERXARSSEAVG 11
           AAPP      S+AAA RDA + +R  E  L+  +  A    K+  +   +R      A+G
Sbjct: 352 AAPPAPS-ERSKAAAERDAIREERRRERRLEARAAAAAASKKSAATRDRDRDVSERIALG 410


>07_01_0331 + 2343570-2344064
          Length = 164

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 686 GSETIDAVDSEGHMFAVPVSADSQYQVLVTFSVQDLEVDLVVLP 555
           GS+TI  + S+G  F VP +A S  Q++      D   + V LP
Sbjct: 16  GSDTILLISSDGEHFNVPSAAASLSQLVSNMIEDDCTTNGVPLP 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,031,625
Number of Sequences: 37544
Number of extensions: 362139
Number of successful extensions: 908
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)