Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_O17
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.        29   3.3  
U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of l...    29   3.3  
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr...    29   4.4  
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.      29   4.4  

>X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.
          Length = 582

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/77 (28%), Positives = 34/77 (44%)
 Frame = +3

Query: 609 PIT*ALFEKCAKVDEMTSWYREIPRRVFHTDTRKHGGITDQVHAQRLSLPHRSAQDRLIA 788
           P T +LFE      EM  +  E  RR      +    +    H+ RL+L +       I 
Sbjct: 43  PSTVSLFE-IPSASEMPGFCSEEDRRFLLKACKFMDQVVKSCHSPRLNLKNSPPFILDIL 101

Query: 789 PSDFFPLILVPSQNNDL 839
           P  +  L+L+ +QNND+
Sbjct: 102 PDTYTHLMLIFTQNNDI 118


>U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform a protein.
          Length = 582

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/77 (28%), Positives = 34/77 (44%)
 Frame = +3

Query: 609 PIT*ALFEKCAKVDEMTSWYREIPRRVFHTDTRKHGGITDQVHAQRLSLPHRSAQDRLIA 788
           P T +LFE      EM  +  E  RR      +    +    H+ RL+L +       I 
Sbjct: 43  PSTVSLFE-IPSASEMPGFCSEEDRRFLLKACKFMDQVVKSCHSPRLNLKNSPPFILDIL 101

Query: 789 PSDFFPLILVPSQNNDL 839
           P  +  L+L+ +QNND+
Sbjct: 102 PDTYTHLMLIFTQNNDI 118


>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 431 HINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 526
           ++ DA N T +LID    K+GD +A+ +A  G
Sbjct: 66  NVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 431 HINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 526
           ++ DA N T +LID    K+GD +A+ +A  G
Sbjct: 66  NVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
          Length = 1383

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 431 HINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 526
           ++ DA N T +LID    K+GD +A+ +A  G
Sbjct: 66  NVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,148,385
Number of Sequences: 27780
Number of extensions: 400908
Number of successful extensions: 1094
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)