Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_O16
(911 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1020 + 30179214-30179285,30179597-30179671,30179839-301799... 31 1.3
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 31 1.7
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 30 2.2
11_06_0115 + 20288220-20288303,20289223-20289706,20290160-202903... 29 5.1
05_05_0226 + 23442971-23443857,23444209-23446324 29 5.1
02_04_0610 + 24335153-24337724,24337835-24338256 29 5.1
11_06_0249 + 21697863-21697923,21698119-21698128,21698160-216987... 29 6.8
07_03_0265 + 15976331-15976645,15977575-15977784,15977869-159779... 29 6.8
11_01_0130 - 1079515-1079685,1079847-1079961,1080237-1080328,108... 28 9.0
06_03_0611 - 22721977-22722276,22722765-22722853,22722978-227230... 28 9.0
>04_04_1020 +
30179214-30179285,30179597-30179671,30179839-30179947,
30180425-30180642,30180729-30181309,30181387-30182185
Length = 617
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 487 DNDRIAYGDANDKSSENVSWKLIPLWENNRVYFKIYSVRRHQYLKLGTGTDG 642
D DR + + +LIP+W + VYF + + +++ GT TDG
Sbjct: 367 DGDRWRLCTVSQVEEVKILLRLIPIWLTSAVYFIANTQAQTTFVQQGTKTDG 418
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -3
Query: 630 RSKFQVLVPTNTVDLEVNPVVLPERNQLPADVLAALVVGIAV 505
RS F L+P L +PVV +RN LPA AA V + V
Sbjct: 4 RSCFFFLLPLLVAALAGSPVVTAQRNALPAAAAAAASVRVGV 45
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 422 ATSRSSTRETILPSNSVLRQTQITTESHTAMPTTRAARTSA 544
+ R S+R LPS+ R QI HTA P + AA A
Sbjct: 2768 SAGRDSSRAAQLPSSDEPRNEQIKDSDHTAQPFSSAAPDQA 2808
>11_06_0115 + 20288220-20288303,20289223-20289706,20290160-20290393,
20291811-20292770,20292931-20293404,20293406-20294664
Length = 1164
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 231 TAVSLILLLEKQSSGSI---IEDTVNNLIRDGNRNVLEFAYKLWIGEGKEIVKHYFPVSV 401
T ++++LL + SGS +E + + D +RN WIG+ KE+V +V
Sbjct: 827 TGMAIVLLQNNRFSGSFPVFLERSTKLQLVDLSRNNFSGKLPTWIGDKKELVLLLLSHNV 886
Query: 402 *TGVI 416
+G+I
Sbjct: 887 FSGII 891
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 126 LAASAGLIDLDINILSAPTRAETRLVDAITTADYNTAVSLILLLEKQSSGSIIEDTVNNL 305
LA A + LD+ +++A + R + TTAD TAV+ + E +E+ V+
Sbjct: 31 LAQEAQSLQLDLRMIAAVMDDQLRAMGRATTADARTAVARLHAEEMLDLAHDVEECVDRF 90
Query: 306 I 308
+
Sbjct: 91 L 91
>02_04_0610 + 24335153-24337724,24337835-24338256
Length = 997
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +3
Query: 147 IDLDINILSAPTRAETRLVDAITTADYNTAVSLILLLEKQSSGSIIEDTVNNL 305
+DL++N+L A + +DA+T TA+ ++ L E Q G +I +++ +L
Sbjct: 313 LDLELNMLEAKDTEGWKFLDALTNC---TALEVLALAENQLQG-VIPNSIGSL 361
>11_06_0249 +
21697863-21697923,21698119-21698128,21698160-21698766,
21699011-21699090,21699182-21699263,21699357-21699428,
21700128-21700406
Length = 396
Score = 28.7 bits (61), Expect = 6.8
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = +2
Query: 374 RQTLLPCFSLDRCYPRATSRSSTRETILPSNSVLRQTQITTESHTAMPTTRAARTSAG 547
R T +P + RC RA R + + L + +I E+ +PTTR G
Sbjct: 259 RTTTVPAGPVFRCTERAEKRREFYMKLEEKHQALEEEKIQLEAKLKLPTTRPKSPKLG 316
>07_03_0265 +
15976331-15976645,15977575-15977784,15977869-15977916,
15978307-15978675,15978736-15978747,15978763-15978870,
15979156-15979493,15980313-15980430,15983247-15984107,
15984457-15984750
Length = 890
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 224 IGSGDSIDEPRFRSGRSGQNVNVQVNKTGAGRQHA 120
+G GD DE R R+ +S + N+ V + AG +HA
Sbjct: 272 LGHGDQHDELRPRAIQSFKRRNIHVVRVSAGDEHA 306
>11_01_0130 -
1079515-1079685,1079847-1079961,1080237-1080328,
1080435-1080520,1080957-1081056,1082180-1082210,
1082416-1082471
Length = 216
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +1
Query: 352 GSGRVRKSSNTTSLFQFRQVLSESNVKIINKR---DNLAIKLGAAADSDNDRIAYGDAND 522
GS V+ + S+ + E+N N R + LA +GA+AD D D + + D
Sbjct: 111 GSSAVKAIHQSVSIDDIENAIEEANEHTENMRQIQEALATPIGASADFDEDELE-AELED 169
Query: 523 KSSENVSWKL 552
E + +L
Sbjct: 170 LEEEELDHEL 179
>06_03_0611 -
22721977-22722276,22722765-22722853,22722978-22723083,
22723178-22723306,22723803-22723887,22723994-22724103,
22724424-22724624,22725033-22725394,22725612-22725695,
22725791-22725916,22725999-22726161,22726378-22726536,
22727147-22727274,22727371-22727493,22727755-22727899,
22727992-22728068,22728318-22728696,22729325-22729411
Length = 950
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +1
Query: 475 AADSDNDRIAYGDANDKSSENVSWKLIPLWENNRVYFKIYSVRRHQYLKLGTGTDGENDH 654
A+DS I +GD N + +E + + +PLW N+ I + + G +G N+
Sbjct: 212 ASDSVTVPITFGDINIRKAEMLCIQGLPLWRNSSA---IINEETFNGYRKGKSQEGINEI 268
Query: 655 SVYGDDRADTHRH 693
+ D + +H
Sbjct: 269 PMAYDFQDSNEKH 281
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,740,364
Number of Sequences: 37544
Number of extensions: 456247
Number of successful extensions: 1307
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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