Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_O05
         (1021 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    29   7.0  
AF038615-8|AAB94148.1|  266|Caenorhabditis elegans Hypothetical ...    29   7.0  

>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 20/76 (26%), Positives = 27/76 (35%)
 Frame = +3

Query: 615 PSXXSPXXXXTLHXXPTPPSXXXXXXPNLTPXXXLXPLXAPXQXSXXXFXXPXPXXLPXF 794
           P+   P      +   TPP+      P   P     P  +P Q +      P P  LP  
Sbjct: 449 PTIKFPISTGPSYSSTTPPTTPKPAPP--PPSRIPNPSPSP-QPAEVSKSPPPPPPLPPI 505

Query: 795 ITXNTXSPPIXPXXPP 842
            T ++  PP  P  PP
Sbjct: 506 ATPSSVPPPPPPPPPP 521


>AF038615-8|AAB94148.1|  266|Caenorhabditis elegans Hypothetical
           protein R02D3.8 protein.
          Length = 266

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -3

Query: 110 FMXGTCDRWRXRVXAPQRXPLKSXGIPLNXNXW 12
           F   TC  W  +V  P     K+ GIP   N W
Sbjct: 158 FAFVTCGDWDLKVALPNEAKFKNIGIPEYFNQW 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,977,467
Number of Sequences: 27780
Number of extensions: 110921
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2688795166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)