Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_O04
         (1017 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    31   1.7  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    31   1.7  
Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical p...    28   9.3  

>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 403 NPFXPPXLGGFXXTXLPXKFGPFXGXXPGNFPPPP 299
           +P+ PP         +P  FG F     G+FPPPP
Sbjct: 274 HPYGPPHPMHHPYAMMPPPFGFFPPPPRGHFPPPP 308


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 403 NPFXPPXLGGFXXTXLPXKFGPFXGXXPGNFPPPP 299
           +P+ PP         +P  FG F     G+FPPPP
Sbjct: 274 HPYGPPHPMHHPYAMMPPPFGFFPPPPRGHFPPPP 308


>Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical
           protein F47B8.14 protein.
          Length = 255

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 697 GGGGXXXXXXGGGGXXXPPP 756
           GGGG      GGGG   PPP
Sbjct: 24  GGGGGYSGGGGGGGDAAPPP 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,397,668
Number of Sequences: 27780
Number of extensions: 270459
Number of successful extensions: 2298
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2678332928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)