Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_O02
(871 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.49
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.86
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 1.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.1
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 6.1
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.1
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.49
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -2
Query: 588 PXXGXPXXPRXGGXPPXPPPXGXGG 514
P P P GG PP PPP G G
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAG 772
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +1
Query: 610 PLXXP-PXXGGXPPXGXPXGXXPXKTPAPPP 699
P+ P P GG PP P G P PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 489 PXPPPPPXPHPXXGGGGXGGXPPXAGXXGA 578
P P P P P P GG PP G GA
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGA 773
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 498 PPPPXPHPXXGGGGXGGXPP 557
PPPP P P G G PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -1
Query: 586 PXGAPXXPAXGGXPPXPPPPXXGWGXGG 503
P P G PP PPPP GG
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +3
Query: 456 PXKKXXPFXXXPXPPPPPXPHPXXGGGG 539
P P PPPPP P P GG
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +3
Query: 489 PXPPPPPXPHPXXGGGGXGGXPPXAGXXGAP 581
P P P P P P GG PP G P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 574 PXXPAXGGXPPXPPPPXXGWGXG 506
P P GG PP PPPP G G
Sbjct: 753 PPAPIMGGPPP-PPPPPGVAGAG 774
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 489 PXPPPPPXPHPXXGGGGXGGXPPXA 563
P PPPPP P GG P A
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAPQA 799
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.86
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 586 PXGAPXXPAXGGXPPXPPP 530
P GAP PA G PP P P
Sbjct: 1079 PSGAPPVPAPSGIPPVPKP 1097
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect(2) = 1.5
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 489 PXPPPPPXPHPXXGGG 536
P PPPPP P GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 21.4 bits (43), Expect(2) = 1.5
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3
Query: 474 PFXXXPXPPPPP 509
P P PPPPP
Sbjct: 942 PAFPPPPPPPPP 953
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 622 PPXXGGXPPXGXPXGXXPXKTPAPPP 699
PP G PP P G P P PPP
Sbjct: 5 PP--GNPPPPPPPPGFEPPSQPPPPP 28
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 626 PXGGAPPXXGXXXGXPPXKXRPPPPXA 706
P APP PP PPPP A
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSA 1720
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 562 AXGGXPPXPPPP 527
A GG PP PPPP
Sbjct: 301 ANGGLPPPPPPP 312
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 6.1
Identities = 23/72 (31%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Frame = -1
Query: 556 GGXPPXPPPPXXGW-GXGGGGGXGXXXKGXXFXXGFXXXXPPQXXTXPPRXXGGXXQGGX 380
GG PPP G+ G GG GG G G G P P GG G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGG----HGGFGGGPGGFEGGPGGFGGGPGGFGG 249
Query: 379 KXXEXPGGGGNF 344
GG G F
Sbjct: 250 GLGGFGGGPGGF 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.147 0.495
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,555,267
Number of Sequences: 5004
Number of extensions: 19926
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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