Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_O02
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.91 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 622 PPXXGGXPPXGXPXGXXPXKTPA 690
           PP     PP G P G  P + P+
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNPS 61


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/16 (56%), Positives = 9/16 (56%), Gaps = 1/16 (6%)
 Frame = +2

Query: 494 TPP-PXXPPPXPXGGG 538
           TPP P  PPP P   G
Sbjct: 337 TPPKPAPPPPPPSSSG 352


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 547  PPXPPPPXXG 518
            PP PPPP  G
Sbjct: 1356 PPPPPPPSSG 1365


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 565  PAXGGXPPXPPPP 527
            P  G   P PPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 474  PFXXXPXPPPPP 509
            P    P PPPPP
Sbjct: 1852 PVSGSPEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.147    0.495 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,098
Number of Sequences: 438
Number of extensions: 3740
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)