Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_O01
(948 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 30 2.1
U29096-1|AAA68406.1| 105|Caenorhabditis elegans Neuropeptide-li... 29 4.9
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 28 8.5
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 8.5
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 28 8.5
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 28 8.5
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 8.5
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 8.5
AF022983-5|AAK82915.1| 79|Caenorhabditis elegans Hypothetical ... 28 8.5
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/57 (35%), Positives = 21/57 (36%)
Frame = -3
Query: 862 GGDXXXGXWGGXXXVMAEXXXXXXXXXXGXG*GGXLGGR*XXGGXGGGVXGGXDXXG 692
G + G WGG G G GG GGR GG GGG GG G
Sbjct: 73 GNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRG 129
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Frame = +1
Query: 391 PXNVXXXLLXNXXYPPFSHXXXXPFLPXXPLPPHXPXXXPFXXP---PXPLFSXPXXPXX 561
P N + N P P++P PLPP P P P P P P P
Sbjct: 59 PFNPVFNIHFNCCGAPRPSPSCCPYVPPAPLPPPPPPASPCCGPSPVPAPCCPPPPAPAA 118
Query: 562 P 564
P
Sbjct: 119 P 119
>U29096-1|AAA68406.1| 105|Caenorhabditis elegans Neuropeptide-like
protein protein32 protein.
Length = 105
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -2
Query: 563 GXXGXXGXEKRGXGGXXKGXXXGXWGGR-GXXGKKGXXXXWEKGG 432
G G G RG GG G G WGGR G G+ G + GG
Sbjct: 56 GGWGGRGGWGRG-GGRGYGGRGGGWGGRGGGWGRGGGGRGFYGGG 99
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 28.3 bits (60), Expect = 8.5
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 2/79 (2%)
Frame = -3
Query: 937 SXGXRGGXNRGXXXEXXXXXXXVEGGGDXXXGXWGGXXXVMAEXXXXXXXXXXGXG*--G 764
S G GG N G G G WGG G G
Sbjct: 178 SQGGWGGQNGGGQGGNQGGGGGRGGNQGGEQGGWGGQGGSQGGSQGGSQGGWGNQGGQQG 237
Query: 763 GXLGGR*XXGGXGGGVXGG 707
G GG+ GG GGG GG
Sbjct: 238 GGRGGQQGPGGWGGGGRGG 256
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 563 GXXGXXGXEKRGXGGXXKGXXXGXWGGRG 477
G G ++ G GG +G G WGG+G
Sbjct: 293 GWGGPQQQQQGGWGGPQQGGGGGGWGGQG 321
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 563 GXXGXXGXEKRGXGGXXKGXXXGXWGGRG 477
G G ++ G GG +G G WGG+G
Sbjct: 256 GWGGPQQQQQGGWGGPQQGGGGGGWGGQG 284
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 563 GXXGXXGXEKRGXGGXXKGXXXGXWGGRG 477
G G ++ G GG +G G WGG+G
Sbjct: 255 GWGGPQQQQQGGWGGPQQGGGGGGWGGQG 283
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 563 GXXGXXGXEKRGXGGXXKGXXXGXWGGRG 477
G G ++ G GG +G G WGG+G
Sbjct: 294 GWGGPQQQQQGGWGGPQQGGGGGGWGGQG 322
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 563 GXXGXXGXEKRGXGGXXKGXXXGXWGGRG 477
G G ++ G GG +G G WGG+G
Sbjct: 293 GWGGPQQQQQGGWGGPQQGGGGGGWGGQG 321
>AF022983-5|AAK82915.1| 79|Caenorhabditis elegans Hypothetical
protein R13D11.10 protein.
Length = 79
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -2
Query: 563 GXXGXXGXEKRGXGGXXKGXXXGXWGGRGXXG 468
G G G G G G G WGGRG G
Sbjct: 43 GGYGGYGYRPYGGYGGWGGRGMGGWGGRGMGG 74
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,794,844
Number of Sequences: 27780
Number of extensions: 139121
Number of successful extensions: 716
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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