Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_N24
         (1160 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.095

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 59  GGXXPPPPPPRXXGGXXPP 3
           GG  PPPPPP   G   PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPP 777



 Score = 29.9 bits (64), Expect = 0.70
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -3

Query: 99  APXFXRIPLHXXXWGXXPPPPPPPXXXGXXXP 4
           AP    +P      G  PPPPPPP   G   P
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 27.9 bits (59), Expect = 2.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 76  PSXNXVGXXPPPPPPPXXXGG 14
           P     G  PPPPPPP    G
Sbjct: 768 PGVAGAGPPPPPPPPPAVSAG 788



 Score = 27.1 bits (57), Expect(2) = 0.095
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 76  PSXNXVGXXPPPPPPP 29
           P     G  PPPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPP 781



 Score = 24.2 bits (50), Expect(2) = 0.095
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 49  PPPPPPPXXXGG 14
           PPPPPP    GG
Sbjct: 778 PPPPPPAVSAGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.307    0.133    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,670
Number of Sequences: 5004
Number of extensions: 20689
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 621560784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)