Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_N24
(1160 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 32 0.67
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 26 0.75
AL110501-9|CAB54507.2| 802|Caenorhabditis elegans Hypothetical ... 25 1.9
AL033514-40|CAD36501.1| 802|Caenorhabditis elegans Hypothetical... 25 1.9
AJ319870-1|CAC67459.1| 802|Caenorhabditis elegans ZYG-8 protein... 25 1.9
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 24 2.2
Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical pr... 25 2.4
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 25 3.1
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 24 3.3
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 24 3.3
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 24 3.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 25 5.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 8.3
U97017-2|AAB52359.1| 281|Caenorhabditis elegans Hypothetical pr... 29 8.3
U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical pr... 29 8.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 8.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 8.3
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 29 8.3
AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical... 29 8.3
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 29 8.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 8.3
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc... 25 8.5
AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase assoc... 25 9.2
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 32.3 bits (70), Expect = 0.67
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 67 NXVGXXPPPPPPPXXXGGXXP 5
N G PPPPPPP GG P
Sbjct: 571 NLSGAPPPPPPPPPMLGGPPP 591
Score = 30.7 bits (66), Expect = 2.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 59 GGXXPPPPPPRXXGGXXPP 3
G PPPPPP GG PP
Sbjct: 574 GAPPPPPPPPPMLGGPPPP 592
Score = 30.3 bits (65), Expect = 2.7
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 77 PFTQXXGGXXPPPPPPRXXGGXXPP 3
P Q G PPPPPP G PP
Sbjct: 567 PLPQNLSGAPPPPPPPPPMLGGPPP 591
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 25.8 bits (54), Expect(2) = 0.75
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 76 PSXNXVGXXPPPPPPP 29
P G PPPPPPP
Sbjct: 42 PPPPMCGCAPPPPPPP 57
Score = 25.0 bits (52), Expect(2) = 0.75
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -2
Query: 49 PPPPPPPXXXG 17
PPPPPPP G
Sbjct: 53 PPPPPPPPMCG 63
>AL110501-9|CAB54507.2| 802|Caenorhabditis elegans Hypothetical
protein Y79H2A.11 protein.
Length = 802
Score = 25.0 bits (52), Expect(2) = 1.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 49 PPPPPPPXXXGG 14
PPPPPPP G
Sbjct: 17 PPPPPPPGSEAG 28
Score = 24.2 bits (50), Expect(2) = 1.9
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2
Query: 67 NXVGXXPPPPPPP 29
N PPPPPPP
Sbjct: 10 NDTTARPPPPPPP 22
>AL033514-40|CAD36501.1| 802|Caenorhabditis elegans Hypothetical
protein Y79H2A.11 protein.
Length = 802
Score = 25.0 bits (52), Expect(2) = 1.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 49 PPPPPPPXXXGG 14
PPPPPPP G
Sbjct: 17 PPPPPPPGSEAG 28
Score = 24.2 bits (50), Expect(2) = 1.9
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2
Query: 67 NXVGXXPPPPPPP 29
N PPPPPPP
Sbjct: 10 NDTTARPPPPPPP 22
>AJ319870-1|CAC67459.1| 802|Caenorhabditis elegans ZYG-8 protein
protein.
Length = 802
Score = 25.0 bits (52), Expect(2) = 1.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 49 PPPPPPPXXXGG 14
PPPPPPP G
Sbjct: 17 PPPPPPPGSEAG 28
Score = 24.2 bits (50), Expect(2) = 1.9
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2
Query: 67 NXVGXXPPPPPPP 29
N PPPPPPP
Sbjct: 10 NDTTARPPPPPPP 22
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 23.8 bits (49), Expect(3) = 2.2
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -2
Query: 49 PPPPPPPXXXGGXXP 5
PPPPPP G P
Sbjct: 580 PPPPPPSFMFNGKVP 594
Score = 21.8 bits (44), Expect(3) = 2.2
Identities = 7/15 (46%), Positives = 7/15 (46%)
Frame = -2
Query: 76 PSXNXVGXXPPPPPP 32
P PPPPPP
Sbjct: 542 PPVGMANGGPPPPPP 556
Score = 21.4 bits (43), Expect(3) = 2.2
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 58 GXXPPPPPPP 29
G PPPPP P
Sbjct: 549 GGPPPPPPLP 558
>Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical
protein T16G1.1 protein.
Length = 695
Score = 25.4 bits (53), Expect(2) = 2.4
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 49 PPPPPPPXXXGGXXPR 2
PPPPPPP G R
Sbjct: 535 PPPPPPPRSSGANGNR 550
Score = 23.4 bits (48), Expect(2) = 2.4
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 79 SPSXNXVGXXPPPPPP 32
S S G PPPPPP
Sbjct: 526 SGSNRRSGPPPPPPPP 541
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 24.6 bits (51), Expect(2) = 3.1
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 79 SPSXNXVGXXPPPPPP 32
SP V PPPPPP
Sbjct: 479 SPQPAEVSKSPPPPPP 494
Score = 23.8 bits (49), Expect(2) = 3.1
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 49 PPPPPPP 29
PPPPPPP
Sbjct: 505 PPPPPPP 511
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 24.2 bits (50), Expect(2) = 3.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 91 IXKDSPSXNXVGXXPPPPPPP 29
I + PS PPPPPPP
Sbjct: 174 IRHEIPSFMTSLQAPPPPPPP 194
Score = 24.2 bits (50), Expect(2) = 3.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 49 PPPPPPPXXXGG 14
PPPPPPP G
Sbjct: 189 PPPPPPPQNPRG 200
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 24.2 bits (50), Expect(2) = 3.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 91 IXKDSPSXNXVGXXPPPPPPP 29
I + PS PPPPPPP
Sbjct: 174 IRHEIPSFMTSLQAPPPPPPP 194
Score = 24.2 bits (50), Expect(2) = 3.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 49 PPPPPPPXXXGG 14
PPPPPPP G
Sbjct: 189 PPPPPPPQNPRG 200
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 24.2 bits (50), Expect(2) = 3.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 91 IXKDSPSXNXVGXXPPPPPPP 29
I + PS PPPPPPP
Sbjct: 174 IRHEIPSFMTSLQAPPPPPPP 194
Score = 24.2 bits (50), Expect(2) = 3.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 49 PPPPPPPXXXGG 14
PPPPPPP G
Sbjct: 189 PPPPPPPQNPRG 200
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 25.4 bits (53), Expect(2) = 5.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 58 GXXPPPPPPP 29
G PPPPPPP
Sbjct: 304 GMWPPPPPPP 313
Score = 22.2 bits (45), Expect(2) = 5.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 46 PPPPPPXXXG 17
PPPPPP G
Sbjct: 327 PPPPPPSRFG 336
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 25.4 bits (53), Expect(2) = 5.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 58 GXXPPPPPPP 29
G PPPPPPP
Sbjct: 294 GMWPPPPPPP 303
Score = 22.2 bits (45), Expect(2) = 5.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 46 PPPPPPXXXG 17
PPPPPP G
Sbjct: 317 PPPPPPSRFG 326
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 29.1 bits (62), Expect = 6.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 58 GXXPPPPPPPXXXGG 14
G PPPPPPP GG
Sbjct: 28 GCAPPPPPPPCGCGG 42
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 25.4 bits (53), Expect(2) = 7.9
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 58 GXXPPPPPPP 29
G PPPPPPP
Sbjct: 94 GYVPPPPPPP 103
Score = 21.8 bits (44), Expect(2) = 7.9
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -2
Query: 49 PPPPPPPXXXGGXXPR 2
PPPPPP PR
Sbjct: 98 PPPPPPTQPEPEPEPR 113
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 59 GGXXPPPPPPRXXGG 15
GG PPPPPP GG
Sbjct: 50 GGCAPPPPPPACGGG 64
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 59 GGXXPPPPPPRXXGG 15
GG PPPPPP GG
Sbjct: 107 GGCAPPPPPPACGGG 121
>U97017-2|AAB52359.1| 281|Caenorhabditis elegans Hypothetical
protein F47B3.4 protein.
Length = 281
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 103 VCSXIXKDSPSXNXVGXXPPPPPPP 29
VC K+ P+ + PPPPPP
Sbjct: 33 VCGKSKKNKPARSVASSAEPPPPPP 57
>U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical
protein C42D4.3 protein.
Length = 255
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 59 GGXXPPPPPPRXXGG 15
GG PPPPPP GG
Sbjct: 32 GGGCPPPPPPMCSGG 46
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 8.3
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 59 GGXXPPPPPPRXXGGXXPP 3
GG PPPPPP GG PP
Sbjct: 756 GGPPPPPPPP---GGCPPP 771
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 8.3
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 59 GGXXPPPPPPRXXGGXXPP 3
GG PPPPPP GG PP
Sbjct: 756 GGPPPPPPPP---GGCPPP 771
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 28.7 bits (61), Expect = 8.3
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 96 PXFXRIPLHXXX-WGXXPPPPPPP 28
P + R P H WG PPPPPPP
Sbjct: 64 PPWRRPPWHRRPPWGL-PPPPPPP 86
>AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical
protein Y37D8A.21 protein.
Length = 282
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 78 PLHXXXWGXXPPPPPPPXXXG 16
P H + PPPPPPP G
Sbjct: 144 PRHHRQYDPLPPPPPPPLMGG 164
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 76 PSXNXVGXXPPPPPPP 29
P+ N V PPPPPPP
Sbjct: 58 PNDNIVKATPPPPPPP 73
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 8.3
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 59 GGXXPPPPPPRXXGGXXPP 3
GG PPPPPP GG PP
Sbjct: 339 GGPPPPPPPP---GGCPPP 354
>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
protein homologprotein 1, isoform a protein.
Length = 1256
Score = 25.4 bits (53), Expect(2) = 8.5
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 58 GXXPPPPPPP 29
G PPPPPPP
Sbjct: 1011 GPPPPPPPPP 1020
Score = 21.4 bits (43), Expect(2) = 8.5
Identities = 7/15 (46%), Positives = 7/15 (46%)
Frame = -2
Query: 49 PPPPPPPXXXGGXXP 5
PPPPPP P
Sbjct: 1015 PPPPPPADFFANIAP 1029
>AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform b protein.
Length = 495
Score = 25.4 bits (53), Expect(2) = 9.2
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 58 GXXPPPPPPP 29
G PPPPPPP
Sbjct: 250 GPPPPPPPPP 259
Score = 21.4 bits (43), Expect(2) = 9.2
Identities = 7/15 (46%), Positives = 7/15 (46%)
Frame = -2
Query: 49 PPPPPPPXXXGGXXP 5
PPPPPP P
Sbjct: 254 PPPPPPADFFANIAP 268
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.307 0.133 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,536,109
Number of Sequences: 27780
Number of extensions: 183622
Number of successful extensions: 2220
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3161640774
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
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