Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_N23
(878 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 176 4e-45
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 175 5e-45
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 172 5e-44
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 27 2.7
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 4.7
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 26 6.1
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 6.1
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 8.1
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 176 bits (428), Expect = 4e-45
Identities = 80/135 (59%), Positives = 96/135 (71%)
Frame = +2
Query: 140 AAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKI 319
A+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C NP+RG FHFRAPS+I
Sbjct: 21 ASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRI 80
Query: 320 LWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVG 499
K VRGM+PHKT RG+ AL L+ +G PPPFD LKPGR YC VG
Sbjct: 81 FQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVG 140
Query: 500 RLSHEIGWKYRECCS 544
RLS E+GWKY + S
Sbjct: 141 RLSSEVGWKYSDIVS 155
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 175 bits (427), Expect = 5e-45
Identities = 79/132 (59%), Positives = 95/132 (71%)
Frame = +2
Query: 140 AAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKI 319
A+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C NP+RG FHFRAPS+I
Sbjct: 21 ASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRI 80
Query: 320 LWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVG 499
K VRGM+PHKT RG+ AL L+ +G PPPFD LKPGR YC VG
Sbjct: 81 FQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVG 140
Query: 500 RLSHEIGWKYRE 535
RLS E+GWKY +
Sbjct: 141 RLSSEVGWKYND 152
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 172 bits (419), Expect = 5e-44
Identities = 77/135 (57%), Positives = 94/135 (69%)
Frame = +2
Query: 140 AAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKI 319
A+ +AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C NP+RG FHFRAPS+I
Sbjct: 21 ASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRI 80
Query: 320 LWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVG 499
K VRGM+PHKT RG AL+ L+ +G PPPFD LKP R YC +G
Sbjct: 81 FTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIG 140
Query: 500 RLSHEIGWKYRECCS 544
RLS E+GWKY+ S
Sbjct: 141 RLSSEVGWKYKNIVS 155
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 564 KGKAVKRVAYEKKLKRITKDAGXXVSKGD 650
KGK V R+ Y+ K + D+G ++K D
Sbjct: 540 KGKTVGRLNYDMKFHAVVPDSGEEITKVD 568
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 143 AVIAKVLLEGNKVVVVRCEQINISGNFF 226
AV K++ G K VV+RC+ I + +FF
Sbjct: 164 AVGKKLIKAGCKNVVIRCDDIPFASDFF 191
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +3
Query: 507 PMKLDGNTVNVVRKLED---KRKGKAVKRVAYE 596
P+K NTV++ K++ +RKGK KRV+ E
Sbjct: 551 PLKSQKNTVSINNKIDTSKRRRKGKRRKRVSDE 583
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 507 PMKLDGNTVNVVRKLEDKRKGKAVKRVAYEKKLKRITK 620
P + +G N++ L+DK+K + E LK+I++
Sbjct: 405 PERKEGKLDNLINTLQDKKKSSTFSKKDREVLLKKISE 442
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 408 GHPSYVRSLLRAFLPRSVLCGIMP 337
G+ SY+ + L+AFLP++V + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,372
Number of Sequences: 5004
Number of extensions: 49488
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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