Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_N23
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   174   8e-44
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   174   8e-44
Z50794-2|CAA90657.2|  681|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  174 bits (423), Expect = 8e-44
 Identities = 79/151 (52%), Positives = 103/151 (68%)
 Frame = +2

Query: 83  GFXNQAXVXXXXXXXXXXXAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 262
           G  N+A +           A+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 263 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 442
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 443 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRE 535
                 F L+P R +C VGRLSHE+GW++++
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQD 151


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  174 bits (423), Expect = 8e-44
 Identities = 79/151 (52%), Positives = 103/151 (68%)
 Frame = +2

Query: 83  GFXNQAXVXXXXXXXXXXXAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 262
           G  N+A +           A+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 263 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 442
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 443 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRE 535
                 F L+P R +C VGRLSHE+GW++++
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQD 151


>Z50794-2|CAA90657.2|  681|Caenorhabditis elegans Hypothetical
           protein F59F5.3 protein.
          Length = 681

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 516 LDGNTVNVVRKLEDKRKGKAVKRVAYEKKLKRITK 620
           +  N V  +   E  +KG+  ++++ EKK+K I K
Sbjct: 516 ISNNKVCKITDFERAKKGETTRKISIEKKIKEILK 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,863,874
Number of Sequences: 27780
Number of extensions: 292398
Number of successful extensions: 678
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)