Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_N16
(898 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 42 9e-05
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces... 33 0.042
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 32 0.096
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 31 0.22
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||... 29 0.68
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 29 0.68
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 29 1.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 28 1.6
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.6
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 28 1.6
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 28 1.6
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 28 1.6
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 27 4.8
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 8.4
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 26 8.4
>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 42.3 bits (95), Expect = 9e-05
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Frame = +1
Query: 421 VIHLLETLRED--YLLGLITNGPSRAQWQKIERLGLRKYFDCVLVSGDLPWEKPDQHIF- 591
+I L+ +E+ Y++G+I+N R + +E G+ D S D+ +EKP + IF
Sbjct: 111 LIDFLKRNKEERKYIIGIISNTDERIR-TVLEDYGIDHLIDIYAFSYDVGFEKPSREIFD 169
Query: 592 ---HEACKLLN--VEPRNCIMVGDKLETDIKGGKEAE 687
+A KLL ++P C+ +GD L D+ + +
Sbjct: 170 YAMEKAVKLLGQEIQPEECMHLGDDLIKDVSAARNIQ 206
>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 298
Score = 33.5 bits (73), Expect = 0.042
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = +1
Query: 571 KPDQHIFHEACKLLNVEPRNCIMVGDKLETDIKGGKEAELAATVWI--PLQKDEEISD-- 738
KP + +N + + VGD+L TDI+ K + L ++ + + K+EEI +
Sbjct: 220 KPYDEMMEAIIANVNFDRKKACFVGDRLNTDIQFAKNSNLGGSLLVLTGVSKEEEILEKD 279
Query: 739 ---LPDITIDNVTELPE 780
+PD ++++ +L E
Sbjct: 280 APVVPDYYVESLAKLAE 296
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 32.3 bits (70), Expect = 0.096
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = -3
Query: 791 FGKTSGSSVTLSIVMSGRSDISSSFCNGIQTVAASSASFPPLISVSS 651
F TSGSS T + S SSS NG+Q+++ SA+FP L + +S
Sbjct: 220 FAFTSGSSSTNNSTTS-----SSSMANGLQSISKHSAAFPLLSNATS 261
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 31.1 bits (67), Expect = 0.22
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = -3
Query: 809 RLSLGEFGKTSGSSVTLSIVMSGRSDISSSFCNGIQTVAASSASFPPLISVSSLSPTIMQ 630
+LS+ TS + SI ++ S S + QT++ASS++ +I SS+S T+
Sbjct: 77 QLSISSSSSTSSEYSSSSIPITTVSSSDSFIPSSSQTISASSSTTDNVIVSSSISSTVSS 136
Query: 629 LRGSTLRS 606
ST+ S
Sbjct: 137 TPVSTIYS 144
>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 237
Score = 29.5 bits (63), Expect = 0.68
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +3
Query: 78 QIVDILTKIVMFLAILFDLDNTLIQTRKGDTKACNKLVELLQNEYGLPKDMAVESGSTFL 257
Q+ D+ + L + + N+ + D + + L E LQNE G+P +++ S +L
Sbjct: 144 QVQDMKYLRLKGLMTIGSISNSQLSDHNPDFQVLSDLRESLQNELGIPLQLSMGMSSDYL 203
Query: 258 RAFR 269
A +
Sbjct: 204 LAIK 207
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 29.5 bits (63), Expect = 0.68
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 227 VFGKAIFILQQFHELITSFSISFSCL 150
+F K IF LQ FHE SF+CL
Sbjct: 452 IFEKMIFTLQHFHEDFLRLQNSFNCL 477
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 172 KLVISSWNCCKMNMAFPKTWLWRAVPHSYAPSGPRPDDESYALH 303
K V +S C+ + AF KT+ + V PS +P DESY H
Sbjct: 847 KDVETSPGSCETSSAFAKTYAEKEVTSINLPSVRKPLDESYYDH 890
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 703 WIPLQKDEEISDLPDITIDNVTEL---PEVLPNSPKLKRSTN 819
W P + D++I P++ +D++T L E+ + PKL TN
Sbjct: 2389 WHPTELDQKIRIHPEVKVDSLTSLVTFNEIDLSKPKLPSRTN 2430
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 1.6
Identities = 32/113 (28%), Positives = 43/113 (38%)
Frame = -3
Query: 845 LQT*QSSDIFVDRLSLGEFGKTSGSSVTLSIVMSGRSDISSSFCNGIQTVAASSASFPPL 666
LQT SS S S SS T + S S SSS + + ++SS+S
Sbjct: 123 LQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSS 182
Query: 665 ISVSSLSPTIMQLRGSTLRSLHASWKMC*SGFSQGRSPDTRTQSKYLRSPRRS 507
S SS S + S+ S +S S S S + + S S R S
Sbjct: 183 SSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS 235
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -3
Query: 680 SFPPLISVSSLSPTIMQLRGSTLR--SLHASW 591
+FP SV+SLSP++ QL + +R ++H W
Sbjct: 105 TFPEFSSVNSLSPSLFQLIVNRMRFDAIHPEW 136
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = -3
Query: 722 SFCNGIQTVAASSASFPPLISVSSLSPTIMQLRGSTLRSLHASWKMC*SGFSQGR 558
S NG+ +V S+ S PPL +S+SPT+ GS L L + + +G G+
Sbjct: 441 SSINGMNSVNFSTISPPPLSRSASISPTLSG-SGSGLTPLSSHFPSAATGLVGGQ 494
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = -3
Query: 794 EFGKTSGSSVTLSIVMSGRSDISSSFCNGIQTVAASSASFPPLISVSSLSPTIMQL 627
E+ +S SS S + ++ F +Q +SS S PP S +PT L
Sbjct: 29 EWNSSSPSSAPSSSSSQNQVELDEQFARSLQNSQSSSYSLPPFDHPPSKNPTSSSL 84
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 685 ELAATVWIPLQKDEEISDLPDITIDNVTELPEVLPNSP 798
E TV IP+++ +S LP+ +N ++P V+ P
Sbjct: 154 ETNPTVTIPVKRPSTLSKLPESLTENNAKVPNVVIADP 191
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 220 GRPYSFCSSSTSLLQALVS 164
G Y FCSS TSL+ L++
Sbjct: 561 GTSYDFCSSYTSLMDRLIN 579
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 334 LPKNYKHIAKSVSTE 378
LPKNY ++AKS S E
Sbjct: 345 LPKNYAYVAKSTSPE 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,893,334
Number of Sequences: 5004
Number of extensions: 85622
Number of successful extensions: 308
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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