Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_N11
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...    28   1.6  
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...    27   2.7  

>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +2

Query: 539 MIRYIDEXGQTTTRMQ*KKCXICEICDAIALFVTIISCNKQVNNNNCIHFMF-QVQGEVW 715
           + R I E  +   R Q   C +CE CD  A +V ++      +    I     +V GE W
Sbjct: 46  LARGIREASKALDRRQAHLCVLCESCDQEA-YVKLVEALCAESETPLIKVADPKVLGE-W 103

Query: 716 EGFFCINESANARGXAG 766
            G   ++   NAR   G
Sbjct: 104 AGLCVLDRDGNARKVVG 120


>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +2

Query: 539 MIRYIDEXGQTTTRMQ*KKCXICEICDAIALFVTIISCNKQVNNNNCIHFMF-QVQGEVW 715
           + R I E  +   R Q   C +CE CD  A +V ++      +    +     ++ GE W
Sbjct: 49  LARGIREASKALDRRQAHLCVLCESCDQEA-YVKLVEALCAESQTPLVKVADPKILGE-W 106

Query: 716 EGFFCINESANARGXAG 766
            G   ++   NAR   G
Sbjct: 107 AGLCVLDRDGNARKVVG 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,490
Number of Sequences: 5004
Number of extensions: 47740
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)