Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_N07
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.31 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    31   0.31 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.71 
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    27   3.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.8  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 26/77 (33%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
 Frame = -2

Query: 922 PPXXPXG-GXKXGXGXPGKXXXGXEPXXGPPGGXXXGGXXPXGXFXXAPXGGXPPPXXXG 746
           PP  P G G   G G  G    G     G PGG   G   P G       GG P     G
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG---PGGF------GGGPGGFGGG 250

Query: 745 XXXXXGXPXPGGXGPXG 695
                G P   G GP G
Sbjct: 251 LGGFGGGPGGFGGGPGG 267



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 19/50 (38%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
 Frame = -1

Query: 923 PPXXPXRGXKGGXXXXRXXXXGXGTXGGXPXG--GXPGG-GXPPGXXXXG 783
           PP     G  GG         G G  GG P G  G PGG G  PG    G
Sbjct: 201 PPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 21/68 (30%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
 Frame = -1

Query: 902 GXKGGXXXXRXXXXGXGTXGGXPX--GGXPGGGXPPGXXXXGPRXGVXPPXXXXGXXXXX 729
           G  GG         G G  GG     GG  G G  PG    GP      P    G     
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254

Query: 728 XXPPGGGG 705
              PGG G
Sbjct: 255 GGGPGGFG 262


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +3

Query: 771  PPXGAXXXXPXGXXPPXXXPPGGPXXGSXPXXXXPGXPXP 890
            PP       P    P    PP GP  G+      PG P P
Sbjct: 1886 PPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAP 1925


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 799 PGGXPPPGXPPXGXPPXVPXP 861
           PG  PPP  PP   PP  P P
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPP 26



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 784 PXXXXPGGXPPPGXPPXGXPPXVPXP 861
           P    P   PPPG  P   PP  P P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 845 GGXPXGGXPGGGXPPG 798
           G  P GG PGGG P G
Sbjct: 439 GSFPGGGFPGGGFPGG 454


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +1

Query: 709 PPPGGXXXKXXXPXXXXGGXTPXRGPXXXXPGGXPPPGXPP 831
           P P         P    GG  P   P      G PPP  PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = +1

Query: 706 PPPPGGXXXKXXXPXXXXGGXTPXRGPXXXXPGGXPPPGXPPXGXPPXVPXP 861
           PPPP                  P  G     P   PPPG    G PP  P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP---PPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
 Frame = +3

Query: 771 PPXGAXXXXPXGXXPPXXXPPGGPXXGSXPXXXXP------GXPXPXFXPPXGXXGG 923
           PP       P     P   PP  P  G  P    P      G P P   PP    GG
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,944
Number of Sequences: 5004
Number of extensions: 34416
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)