Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_N06
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.55 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 362 PPQKXXVXNPPPPXXXKXXGGGGXPPP 442
           PP    +  PPPP       G G PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 29.1 bits (62), Expect = 0.95
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 359 PPPQKXXVXNPPPPXXXKXXGGGGXPPP 442
           PPP       PPPP      G G  PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 358 PPPPKXXG*XSPPPPXXKKXXWXXXXPPPP 447
           PP P   G   PPPP           PPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 343 GGGGXPPPPKXXG*XSPPPP 402
           GG   PPPP       PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP 778


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,087
Number of Sequences: 5004
Number of extensions: 14827
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)