Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_N04
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    28   2.0  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    27   3.4  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    27   3.4  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   3.4  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    27   3.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   4.5  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.0  
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||...    26   7.9  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   7.9  

>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 142 VHAFVKRDAPKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGT 288
           V A +K+D  +E  S   L      TIE+L+ K E+   P    K F +
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSS 176


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 550 VWTNPN*NAXKKMLIXENLGSYCXXXXPFXLE*KIYN 660
           VWT  N  +  K ++    GSYC    P  ++   +N
Sbjct: 39  VWTGENITSIWKTILINETGSYCVAARPMTMDGAEFN 75


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 550 VWTNPN*NAXKKMLIXENLGSYCXXXXPFXLE*KIYN 660
           VWT  N  +  K ++    GSYC    P  ++   +N
Sbjct: 39  VWTGENITSIWKTILINETGSYCVAARPMTMDGAEFN 75


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 550 VWTNPN*NAXKKMLIXENLGSYCXXXXPFXLE*KIYN 660
           VWT  N  +  K ++    GSYC    P  ++   +N
Sbjct: 11  VWTGENITSIWKTILINETGSYCVAARPMTMDGAEFN 47


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 550 VWTNPN*NAXKKMLIXENLGSYCXXXXPFXLE*KIYN 660
           VWT  N  +  K ++    GSYC    P  ++   +N
Sbjct: 39  VWTGENITSIWKTILINETGSYCVAARPMTMDGAEFN 75


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -2

Query: 260 GAKADSTFSLNSSIVFFALSASVFMLLSSLGASRLTNACTLARQIANKIISSLFILD 90
           G  A + F ++ SIV+ A+ ++V   +  + A           ++ NK+ S L++LD
Sbjct: 410 GYMAITKFEVSQSIVYSAIVSAVAEFIRQILAEDQLLLNNFFEELKNKLESDLYLLD 466


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 172 KEDNSINTLAESAKKTIEELREKVESAL 255
           KE NSI+ L+ S +KTIE  R  + S +
Sbjct: 371 KEKNSISELSPSLQKTIEWARVNLASTI 398


>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/75 (21%), Positives = 36/75 (48%)
 Frame = -1

Query: 426 YSITSRTLLHSIYLGLCT*ILKNYFSGFRCFRGLQIFIKFVEAVYHRAKVFLNSLRGQGG 247
           Y +  R +++  YL +   + ++Y  GF  FR ++ ++  +  + H+ ++ +  + G G 
Sbjct: 60  YDLEQRMIIYKDYLCIEK-LEEDYVPGFLSFREIKWYLPLLNHIPHQFRIDIILVDGNGV 118

Query: 246 FNFFPQFLNCFLRTL 202
            +     L C L  L
Sbjct: 119 LHPVGFGLACHLGVL 133


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 276 KLWHDGRQLQRIL*KSEARGSTESL-RSNFLVSKYITPN 389
           K W DGR+  RIL ++E R S  ++ RSN    +Y   N
Sbjct: 216 KKWSDGRR-DRILKQAEERRSNRAVGRSNLSGREYFESN 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,145
Number of Sequences: 5004
Number of extensions: 46637
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)