Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_N03
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624...    31   0.90 
12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076...    30   2.1  
08_02_1339 + 26252609-26252925,26253025-26253227,26253379-262535...    29   3.6  
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    28   8.4  
03_06_0690 - 35571816-35572586                                         28   8.4  

>03_02_0186 -
           6243487-6243799,6243892-6244400,6244495-6244557,
           6245482-6245681,6246125-6246519,6246776-6246888
          Length = 530

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 15/25 (60%), Positives = 15/25 (60%)
 Frame = +1

Query: 454 CLFCACASQSRSILVCLLHRCYPAP 528
           CLFC     SR ILVC L RC  AP
Sbjct: 58  CLFCEANFISRRILVCDLLRCLVAP 82


>12_01_1025 -
           10506144-10506226,10506643-10506699,10507502-10507605,
           10507884-10507937,10508107-10508193,10509027-10509214,
           10509793-10509854,10510084-10510354,10510756-10510834,
           10511715-10511913,10512816-10512960,10513324-10513416,
           10514449-10514736
          Length = 569

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 437 ETFYKSACFARVHLNQGQFLYAF-YIAVIQRPDCHGFRCS 553
           ETF+ +AC  R HL QG+ + A+ Y+   +  DC GF  S
Sbjct: 427 ETFFTTACMGRGHLCQGKLVDAYRYLHKEKDMDC-GFSWS 465


>08_02_1339 +
           26252609-26252925,26253025-26253227,26253379-26253536,
           26253802-26253870,26253980-26254461,26254558-26254766,
           26254865-26254901,26254991-26255075,26255186-26255269,
           26255344-26255412,26255520-26255663
          Length = 618

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -2

Query: 629 LHLCYVNFLQHFHIHKHFRVYF-IRSRN--NETRGNQGAG*QRCRRHTRIDL 483
           L+  Y+      HI K  R Y  ++S+   NE   N+GAG ++C R TR+ +
Sbjct: 556 LNCNYIPLKNQPHIAKVKRWYLEMKSKKKINEASSNEGAGQKQCYRDTRVSV 607


>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
            852330-852409,852506-852848,853068-853166,853240-853360,
            853567-853723,853976-854099,855275-855368,855866-857259,
            857882-857924,858240-858458,859379-859605,859701-859948,
            860246-860552,860725-861153
          Length = 1486

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 662  LSCGFRINEAMLHLCYVNFLQHFHIHKHFRVYFIR 558
            L  GFR++ A+ +LC + +L+   I K  R   IR
Sbjct: 1002 LKAGFRLSSALFYLCNILWLRAVKIRKKLRRQGIR 1036


>03_06_0690 - 35571816-35572586
          Length = 256

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 119 AERDGYKPSQNQDKTSWFPA 60
           A R G KP+Q + +T+W PA
Sbjct: 109 AHRRGQKPAQRRPRTAWIPA 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,383,064
Number of Sequences: 37544
Number of extensions: 386428
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)