Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_N02
         (958 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0711 - 6163460-6163678                                           30   3.1  
02_02_0081 - 6608901-6609680,6610380-6610808,6610893-6610994,661...    30   3.1  
02_04_0557 + 23865202-23865437,23865469-23865997                       29   4.1  

>12_01_0711 - 6163460-6163678
          Length = 72

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 432 AHGRGAPXGPPCTSRRTPTALPXEXCXAPCXTPC 533
           A GRGA     C  R +P   P   C +P   PC
Sbjct: 36  AAGRGANVNMVCVPRPSPEGCPIPPCGSPEYAPC 69


>02_02_0081 -
           6608901-6609680,6610380-6610808,6610893-6610994,
           6611114-6611429,6611624-6611806,6611909-6612030,
           6612181-6612251,6612732-6612921
          Length = 730

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 116 TSWPAKFVVLFACIALAQGAMVRRDAPDFFKDI 214
           T WP +  ++FA +AL    + ++D PD  K+I
Sbjct: 656 TDWPVEEALVFAKLALRCAELRKKDRPDLGKEI 688


>02_04_0557 + 23865202-23865437,23865469-23865997
          Length = 254

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 224 CGVRCP*RSRERRVAPSLLGPERCRRRELRTWLAMMYCRETEC-GGD 87
           C  RC  R  E   AP+   P   RRR +  WL+++ C  T   GGD
Sbjct: 45  CFGRCRARRGEESSAPT---PGEQRRRSVAAWLSVISCIRTRARGGD 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,189,105
Number of Sequences: 37544
Number of extensions: 249154
Number of successful extensions: 697
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)