Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_N02
         (958 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    30   2.1  
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    30   2.1  

>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           c protein.
          Length = 1510

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 79  RFASPPHSVSRQYIMASQVRSSLRLHRSGPR--SDGATR--RSRLLQGHRTP 222
           R   PP S SR+    S  RSSL  HR+  R  SDG  R  RS   + HR P
Sbjct: 348 RPTEPPPSYSREDPYRSTSRSSLSRHRNRSRSPSDGMDRSGRSSSRRTHRRP 399


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           a protein.
          Length = 1507

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 79  RFASPPHSVSRQYIMASQVRSSLRLHRSGPR--SDGATR--RSRLLQGHRTP 222
           R   PP S SR+    S  RSSL  HR+  R  SDG  R  RS   + HR P
Sbjct: 348 RPTEPPPSYSREDPYRSTSRSSLSRHRNRSRSPSDGMDRSGRSSSRRTHRRP 399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,259,376
Number of Sequences: 27780
Number of extensions: 186226
Number of successful extensions: 441
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)