Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_M24
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 89 4e-18
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 88 8e-18
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 31 1.6
07_03_1173 - 24526632-24526755,24527057-24527226,24527441-245275... 29 3.7
12_02_0882 - 23978169-23979251 29 4.9
02_02_0198 + 7705868-7706065,7706955-7707052,7707269-7707374,770... 29 6.4
07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312 28 8.5
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802... 28 8.5
04_04_0065 + 22456225-22456744,22456813-22457768 28 8.5
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/55 (72%), Positives = 46/55 (83%)
Frame = +1
Query: 226 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRG 390
VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV G
Sbjct: 31 VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPG 85
Score = 79.8 bits (188), Expect = 3e-15
Identities = 31/35 (88%), Positives = 33/35 (94%)
Frame = +2
Query: 389 GGGTHRSGQGAFGNMCRGGRMFAPTXPWRRWHRRV 493
GGGTHR+GQGAFGNMCRGGRMFAPT WR+WHRRV
Sbjct: 85 GGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRV 119
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 88.2 bits (209), Expect = 8e-18
Identities = 40/58 (68%), Positives = 46/58 (79%)
Frame = +1
Query: 217 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRG 390
+P V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV G
Sbjct: 27 MPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPG 84
Score = 80.2 bits (189), Expect = 2e-15
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = +2
Query: 389 GGGTHRSGQGAFGNMCRGGRMFAPTXPWRRWHRRV 493
GGGTHR+GQGAFGNMCRGGRMFAPT WRRWHRRV
Sbjct: 84 GGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRV 118
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 464 SWGRTYVHHDTCYRRHPDRTYEYHHP 387
SWGR H D RR P R+ +HHP
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHHP 326
>07_03_1173 -
24526632-24526755,24527057-24527226,24527441-24527506,
24527858-24527953,24528340-24528438,24528730-24528819,
24529016-24529111,24529561-24529654,24530254-24530351,
24530395-24530679
Length = 405
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Frame = +2
Query: 323 VTKP--VLNHGVLDVLSPEFRVSVG--GGTHRSGQGAFGNMCRGGRMFAPTXPWRRWHRR 490
V KP VL H VLD L E R G + S G N GG P W+ WHR
Sbjct: 331 VEKPSEVLKH-VLDFLGTERRPEKAEQGSSLPSTVGGDNNPVGGGSEAVPRR-WKNWHRN 388
Query: 491 VXS 499
+ S
Sbjct: 389 ILS 391
>12_02_0882 - 23978169-23979251
Length = 360
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -3
Query: 273 NVNIIDQVRTD-GRLEHEREGLGCXPAPSHSSLSTPTXKGRATDRLISLL*RSYTSEIYT 97
++NI +Q + R+++E+ GL P S P +TD L SL+ +S+ T
Sbjct: 286 DINIPEQRESSVTRMQNEKLGLNLLPRNDSSGHEVPILSVSSTDDLNSLIPTDTSSDKDT 345
Query: 96 NSGDKD 79
NS D
Sbjct: 346 NSNVAD 351
>02_02_0198 +
7705868-7706065,7706955-7707052,7707269-7707374,
7707636-7707740,7707823-7707995,7708435-7708594,
7708683-7708778,7709349-7709417,7709434-7709528,
7709615-7709687
Length = 390
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -1
Query: 452 TYVHHDTCYR--RHPDRTYEYHHPRTRGI 372
T+ +H +R + P RT+ Y+HP +RG+
Sbjct: 96 TWSNHHNIWRDAQVPQRTFTYYHPESRGL 124
>07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312
Length = 133
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 384 DTRNSGDSTSSTP*FSTG--LVTSLLAHAVGLPRVLGHRNVNIIDQV 250
+ R+SG T F+ L + H +G+ VLG +N+ ++DQ+
Sbjct: 85 EARDSGLQTGDPAGFTLADTLACGAVGHIMGVGVVLGLKNIGVLDQI 131
>06_03_0398 -
20379748-20379820,20379930-20380024,20380127-20380222,
20380342-20380501,20380844-20381016,20381102-20381206,
20381460-20381565,20381741-20381947,20383478-20383563,
20383655-20383846
Length = 430
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -1
Query: 452 TYVHHDTCYR--RHPDRTYEYHHPRTRGI 372
T+ +H +R + P +T+ Y+HP +RG+
Sbjct: 159 TWANHHNIWRDAQVPQKTFTYYHPESRGL 187
>04_04_0065 + 22456225-22456744,22456813-22457768
Length = 491
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 323 VTKPVLNHGVLDVLSPEFRVSVGG 394
+ +P L HG VL PEF SVGG
Sbjct: 336 IVRPDLIHGDAAVLPPEFMESVGG 359
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,173,330
Number of Sequences: 37544
Number of extensions: 331400
Number of successful extensions: 811
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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