Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_M24
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    79   3e-15
AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain pro...    29   4.3  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 37/58 (63%), Positives = 45/58 (77%)
 Frame = +1

Query: 217 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRG 390
           LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRG
Sbjct: 23  LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRG 80



 Score = 71.3 bits (167), Expect = 8e-13
 Identities = 29/35 (82%), Positives = 30/35 (85%)
 Frame = +2

Query: 389 GGGTHRSGQGAFGNMCRGGRMFAPTXPWRRWHRRV 493
           GGGTHRSGQGAFGNMCRGG MFAP   +RRWHR V
Sbjct: 80  GGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNV 114


>AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform a
           protein.
          Length = 794

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 419 HPDRTYEYHHPRTRGIRATARPVP 348
           H +RT ++  PRT+G R + +P+P
Sbjct: 346 HVNRTTQWEDPRTQGFRGSDQPLP 369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,064,840
Number of Sequences: 27780
Number of extensions: 247031
Number of successful extensions: 608
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)