Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_M23
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 32 0.13
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.51
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.8
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 31.9 bits (69), Expect = 0.13
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +3
Query: 498 PPPXXXXXGGEKXXPPPPXXXFXYXXXXPPPPXGXXXXXXXPPPPXK 638
PPP GE PPP PPPP PPPP K
Sbjct: 299 PPPPMHHEPGEHMPPPP--MHHEPGEHMPPPPMHHEPGEHMPPPPFK 343
Score = 30.3 bits (65), Expect = 0.39
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +3
Query: 498 PPPXXXXXGGEKXXPPPPXXXFXYXXXXPPPPXGXXXXXXXPPPP 632
PPP GE PPP PPPP PPPP
Sbjct: 208 PPPPMHHKPGEHMPPPP--MHHEPGEHMPPPPMHHEPGEHMPPPP 250
Score = 30.3 bits (65), Expect = 0.39
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +3
Query: 498 PPPXXXXXGGEKXXPPPPXXXFXYXXXXPPPPXGXXXXXXXPPPP 632
PPP GE PPP PPPP PPPP
Sbjct: 221 PPPPMHHEPGEHMPPPP--MHHEPGEHMPPPPMHHEPGEHMPPPP 263
Score = 30.3 bits (65), Expect = 0.39
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +3
Query: 498 PPPXXXXXGGEKXXPPPPXXXFXYXXXXPPPPXGXXXXXXXPPPP 632
PPP GE PPP PPPP PPPP
Sbjct: 234 PPPPMHHEPGEHMPPPP--MHHEPGEHMPPPPMHHEPGEHMPPPP 276
Score = 30.3 bits (65), Expect = 0.39
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +3
Query: 498 PPPXXXXXGGEKXXPPPPXXXFXYXXXXPPPPXGXXXXXXXPPPP 632
PPP GE PPP PPPP PPPP
Sbjct: 247 PPPPMHHEPGEHMPPPP--MHHEPGEHMPPPPMHHEPGEHMPPPP 289
Score = 30.3 bits (65), Expect = 0.39
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +3
Query: 498 PPPXXXXXGGEKXXPPPPXXXFXYXXXXPPPPXGXXXXXXXPPPP 632
PPP GE PPP PPPP PPPP
Sbjct: 260 PPPPMHHEPGEHMPPPP--MHHEPGEHMPPPPMHHEPGEHMPPPP 302
Score = 30.3 bits (65), Expect = 0.39
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +3
Query: 498 PPPXXXXXGGEKXXPPPPXXXFXYXXXXPPPPXGXXXXXXXPPPP 632
PPP GE PPP PPPP PPPP
Sbjct: 273 PPPPMHHEPGEHMPPPP--MHHEPGEHMPPPPMHHEPGEHMPPPP 315
Score = 29.9 bits (64), Expect = 0.51
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = +3
Query: 498 PPPXXXXXGGEKXXPPPPXXXFXYXXXXPPPPXGXXXXXXXPPPP 632
PPP GE PPPP PPPP PPPP
Sbjct: 286 PPPPMHHEPGEHM-PPPP-MHHEPGEHMPPPPMHHEPGEHMPPPP 328
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.51
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +3
Query: 498 PPPXXXXXGGEKXXPPPPXXXFXYXXXXPPPPXGXXXXXXXPPPP 632
PP P PP PPPP G PPPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +3
Query: 501 PPXXXXXGGEKXXPPPPXXXFXYXXXXPPPP 593
PP GG PPPP PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +3
Query: 543 PPPXXXFXYXXXXPPPPXGXXXXXXXPPPP 632
PPP PPPP PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 526 GKKXXPXPPPXXXXIXXXPPPPP 594
G P PPP PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 526 GKKXXPXPPPXXXXIXXXPPPPPXG 600
G P PPP PPPPP G
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 582 PPPPXGXXXXXXXPPPP 632
PPPP G PPPP
Sbjct: 12 PPPPPGFEPPSQPPPPP 28
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +3
Query: 501 PPXXXXXGGEKXXPPPPXXXFXYXXXXPPPPXGXXXXXXXPPPP 632
PP PPPP P PP G PPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG--RSAPPPPPP 366
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +3
Query: 531 KXXPPPPXXXFXYXXXXPPPPXGXXXXXXXPPPP 632
K PPPP PP G PPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,338,241
Number of Sequences: 5004
Number of extensions: 19500
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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