Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_M21
         (915 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF068713-16|AAD34663.1|  156|Caenorhabditis elegans Ground-like ...    29   4.6  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    29   6.1  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   8.1  

>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 830 GGXXGGGXFXGPPPQXXXGGXXGG 759
           GG  GGG    PPP    GG  GG
Sbjct: 39  GGGCGGGGGCAPPPAPCGGGCGGG 62



 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 830 GGXXGGGXFXGPPPQXXXGGXXGG 759
           GG  GGG    PPP    GG  GG
Sbjct: 63  GGGCGGGGGCAPPPAPCGGGCGGG 86


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 830 GGXXGGGXFXGPPPQXXXGGXXGG 759
           GG  GGG    PPP    GG  GG
Sbjct: 39  GGGCGGGGGCAPPPAPCGGGCGGG 62



 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 830 GGXXGGGXFXGPPPQXXXGGXXGG 759
           GG  GGG    PPP    GG  GG
Sbjct: 63  GGGCGGGGGCAPPPAPCGGGCGGG 86


>AF068713-16|AAD34663.1|  156|Caenorhabditis elegans Ground-like
           (grd related) protein31 protein.
          Length = 156

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 830 GGXXGGGXFXGPPPQXXXGGXXGG 759
           GG  GGG    PPP    GG  GG
Sbjct: 37  GGGCGGGCGCAPPPPPCCGGGCGG 60


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 830 GGXXGGGXFXGPPPQXXXGGXXGG 759
           GG  GGG    PPP    GG  GG
Sbjct: 45  GGGCGGGCAPPPPPPACGGGCGGG 68



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 830 GGXXGGGXFXGPPPQXXXGGXXGG 759
           GG  GGG    PPP    GG  GG
Sbjct: 102 GGGCGGGCAPPPPPPACGGGCGGG 125


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 760 PPXXPPXXXWGGGPQXXPPPXFP 828
           PP  PP   + GG    PPP +P
Sbjct: 334 PPPPPPGMRYPGGMPPPPPPRYP 356


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 760 PPXXPPXXXWGGGPQXXPPPXFP 828
           PP  PP   + GG    PPP +P
Sbjct: 344 PPPPPPGMRYPGGMPPPPPPRYP 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,569,962
Number of Sequences: 27780
Number of extensions: 281200
Number of successful extensions: 823
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)