Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_M19
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 35 0.013
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 31 0.16
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.66
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.88
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 2.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 2.0
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 27 4.7
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 26 6.2
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 26 6.2
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 8.2
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 8.2
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 35.1 bits (77), Expect = 0.013
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 491 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSST--VIAPLT 664
VTP P S S PP +T T S P +++ S T + T +ST V +
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360
Query: 665 PSNTTGTLSPP 697
P++T+ T +PP
Sbjct: 361 PTSTSSTSTPP 371
Score = 33.9 bits (74), Expect = 0.031
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +2
Query: 491 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAP-LT 664
+TP P S S+P P T+ + S P T ST + + + S+T + P +
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306
Query: 665 PSNTTGTLSPP 697
P++T+ T +PP
Sbjct: 307 PTSTSSTSTPP 317
Score = 32.3 bits (70), Expect = 0.094
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = +2
Query: 491 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPS 670
VTP P S S PP +T T S P +++ S T + T +ST P+TP+
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST--TPVTPT 412
Query: 671 NTTGTLSPPCT 703
+ S P T
Sbjct: 413 VPPTSSSTPLT 423
Score = 29.5 bits (63), Expect = 0.66
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 491 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTP 667
+TP P S S+P P T+ + S P T ST S T + SS++ P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249
Query: 668 S 670
+
Sbjct: 250 T 250
Score = 28.7 bits (61), Expect = 1.2
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 482 LHSVTPKTKPARKSPGSLPPCW-KTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAP 658
L++ TP T P S S W TT T S T+ST +T T ++ +
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657
Query: 659 LTPSNTTGTLS 691
T S++T T S
Sbjct: 658 STSSSSTATSS 668
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 31.5 bits (68), Expect = 0.16
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 551 TTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPSNTTGTLSPPCT 703
+T TS PP T+ ++ T ++T + P T NTT T +PP T
Sbjct: 63 STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTT 113
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +2
Query: 533 LPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPSNTTGTLSPPCT 703
+PP + T+ + PP T+ ++ + ++T P T N+T T+ PP T
Sbjct: 70 VPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTT 126
Score = 30.3 bits (65), Expect = 0.38
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +2
Query: 485 HSVTPKTKPARKSPGSLPPCWKTTEF--TSRSCPPRTNST*SSITRKVLXMTVSSTVIAP 658
H+ T T P S + TT T+ + PP T+ ++ ++TV+ P
Sbjct: 77 HNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPP 136
Query: 659 LTPSNTTGTLSPPCTKA 709
T NTT T+ PP T A
Sbjct: 137 TTHVNTT-TVVPPTTHA 152
Score = 29.9 bits (64), Expect = 0.50
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 491 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTN-ST*SSITRKVLXMTVSSTVIAPLTP 667
V P + + ++PP T+ T+ + PP T+ +T ++ + ++TV+ P T
Sbjct: 70 VPPPSTSHNSTTTTVPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTH 127
Query: 668 SNTTGTLSPPCT 703
NTT T+ PP T
Sbjct: 128 VNTT-TVVPPTT 138
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.66
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 573 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 472
DLE N +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.88
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 217 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 360
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 184 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 300
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 548 KTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPSNTTGTLSPPCT 703
+TTE T+ P T ++ S T ++ T T I P+ P N + ++S P T
Sbjct: 853 ETTEGTATYTEPTTFTSTFSFTTTIIGGT---TTIIPVNPGNPSSSVSAPPT 901
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 705 FVHGGLKVPVVFEGVSGAITVDDTVI 628
F H + V G+ GAIT+DD++I
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSII 132
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/84 (20%), Positives = 35/84 (41%)
Frame = -2
Query: 270 NLSLLFLQIFRAFGDSGLVFTNDDTHIQLLRQYVISSWCKCGVRSQRTHGEDEGKQSQSH 91
N+S FL +R + + DDT + ++R SS C+ + TH ++
Sbjct: 28 NISKTFLS-YRTLTALAIETSCDDTSVSVVRTSDSSSHCQNEIICLNTHRTISKYEAYGG 86
Query: 90 LGAVVIFESKSTNTVKILRIPYSE 19
+ ++ N K+++ S+
Sbjct: 87 IHPTIVIHEHQKNLAKVIQRTISD 110
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 650 IAPLTPSNTTGTLSPPCTKA 709
+ PL PS+ +G LSPP KA
Sbjct: 146 VHPLRPSHVSGPLSPPEPKA 165
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 421 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 513
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -3
Query: 320 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 141
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 140 EASAHTARTKA 108
+A A T A
Sbjct: 58 NGAAKEAATAA 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,644
Number of Sequences: 5004
Number of extensions: 67396
Number of successful extensions: 280
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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