Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_M18
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0568 + 30305008-30305170,30305277-30305341,30306599-303067...    29   4.8  
05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420     28   8.4  

>01_06_0568 +
           30305008-30305170,30305277-30305341,30306599-30306769,
           30307409-30307978,30308085-30308444,30308496-30308774
          Length = 535

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +3

Query: 27  LIGEFLLRIKML--ESGXFICPRKXGCNQWDPGXG 125
           L G  L R  +L  E+G  +CP   GC  W  G G
Sbjct: 30  LAGVLLFRAALLTIEAGASLCPSTTGCLDWRAGLG 64


>05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420
          Length = 433

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 359 PXXXGGGGXKKXXGXPPRGGG 421
           P   GGGG +   G  PRGGG
Sbjct: 24  PRGCGGGGPRSGGGGGPRGGG 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,097,768
Number of Sequences: 37544
Number of extensions: 344204
Number of successful extensions: 408
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)